Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5424 ATGAGGTACCACCTTAACAAGATACCATGTAAGGTAGCACTGGTTAAAGATGATTTGTCTGTGGATATATGGAGATCTCAAAATGCACCTGACATAAAGATCACAGAAACAAAACCTGTATTTTCTTTGTCCAAGTTTGTATCATTATCAGATTGCCATAGCATGCAAGACATTGAGCATTCAATTATATCTTGCAAAAGTTATCCACATTCTATAGCCTCTTCTGATAGCTCTGGCACTATTAAGAGCTATTCAATGCATTCATATGCCAACAGTTCATTACATTCTGGATCATCTTCTAAACATGAAAGATCAGGTACAATAAGCACCAAAGGAGAATATAGAAATCTCACAACATCTCAGATTGGTCAAAAGCAAAACCAATGTGTCTTTCTACCAAAATCGTCAGGTGCACCGATTCTATGTGTTGGTTGTGGAATAAGGACAGAGTTATCAATCAAGGAGTCAAATAGGTTTACCTATTCTGAAATACAGCTTGCAACAAATGAATTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGTCATGTATATAAGGGTGTGCTTAAAGATGGACAACAAATTGCTGCAAAAGTAAGGAAACAAGAAAGTGCACAAGGGTTTTCTGAATTTCATTCAGAAGTTTATGTCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTAGGTTACTGTTGCAAAGAAAATAAAAATATTCTTATATATGAATATATTTGTAATAAGTCTCTTCATTGGCATTTATTTGAAAATAGTGAAACAGTTCTTGATTGGCCTCAAAGATATGGTATTGCACTTGGGACTGCAAAGGGATTGCGTTTTCTACATGAGGAATGTAGAGGTGGTCCTGTTATTCATAGGGACATGCGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCCATGTTGGGTGACTTTGGCCTTGCCAAATGGAATACTGGTGATGATACTCTTCAAACAAGGATAATGGGAACATTTGGATACCTTGCTCCTGAGTATGCTGAAGATGGCATTGTTTCTGAAGGAACAGATGTGTATTCTTATGGGGTCACTTTGTTACAATTGATATCAGGACGCCAAGTAGGCAATTTCAATAATCCAGATCAGCAACAACAATCTCTCCGACAATGGGCTGAACCAATCATTGAGAAGTTGGCTTTACAAGAACTGATCGATCCTCGTTTGGGAGAATCATATGATACATATGAATTATACCTTATGGCTAAAGCAGCTTATTTCTGTATGCAAAGGAAGCCTGAGATGCGTCCATCAATGAGAGAGGTTGTGCGGTTTCTTGAGGGAGAAAGTTATCAATTCCAGACCCTGGAATTGGAAGGTCAATTTGTACCAAACCATAACATTTGA 1392 0.3728 MRYHLNKIPCKVALVKDDLSVDIWRSQNAPDIKITETKPVFSLSKFVSLSDCHSMQDIEHSIISCKSYPHSIASSDSSGTIKSYSMHSYANSSLHSGSSSKHERSGTISTKGEYRNLTTSQIGQKQNQCVFLPKSSGAPILCVGCGIRTELSIKESNRFTYSEIQLATNEFSKDNLIGEGGYGHVYKGVLKDGQQIAAKVRKQESAQGFSEFHSEVYVLSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENSETVLDWPQRYGIALGTAKGLRFLHEECRGGPVIHRDMRPSNILLTHDFVPMLGDFGLAKWNTGDDTLQTRIMGTFGYLAPEYAEDGIVSEGTDVYSYGVTLLQLISGRQVGNFNNPDQQQQSLRQWAEPIIEKLALQELIDPRLGESYDTYELYLMAKAAYFCMQRKPEMRPSMREVVRFLEGESYQFQTLELEGQFVPNHNI* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5424 463 ProSiteProfiles Protein kinase domain profile. 171 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g5424 463 PANTHER RECEPTOR-LIKE KINASE 1 453 - -
Tpr2g5424 463 ProSitePatterns Tyrosine protein kinases specific active-site signature. 292 304 IPR008266 GO:0004672|GO:0006468
Tpr2g5424 463 Gene3D Transferase(Phosphotransferase) domain 1 247 454 - -
Tpr2g5424 463 CDD STKc_IRAK 177 443 - -
Tpr2g5424 463 Gene3D Phosphorylase Kinase; domain 1 145 246 - -
Tpr2g5424 463 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Tpr2g5424 463 SUPERFAMILY Protein kinase-like (PK-like) 155 445 IPR011009 -
Tpr2g5424 463 PANTHER OS01G0253100 PROTEIN 1 453 IPR045271 GO:0004714|GO:0006468
Tpr2g5424 463 Pfam Protein kinase domain 172 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5424 Tpr-Chr2 61146554 61149917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5424 159 442 Trihelix Transcription Factor Family AT5G38560 44.674 3.59e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Tpr2g5424 Pkinase 6.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5424 - - vun:114163670 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5424 2 61146554 61149917 Tpr2g5424 2 61146554 61149917 ECH