LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g5423	ATGAATAGATCAGATTTACAACAATTTGCAGCATCATCTTCATCTCATTTTCGTAACCGTTTTCCAAAATCATTTTCTCTTCGTAAGAAAGTACCATGGTGGTACCAAATACTTCATCCACGTTCAAAGTTCATTGCACAATGGAACCTTACATTCCTCTATGCATGTCTATTTGCTCTTTTTTTGGATCCTCTTTATTTCTATATTCCGATTACCGGAGACAAAGCTTGTATGCAGACGGATTTGGTTCTCGGTGTGGTTGTCACGTTCTTGCGTACCGTGGCTGATCTATTCTTCTTGTTTCATGTGGTTCTTAAGTTTCGTACCGCGTTCAATTCTCCTACCTCTCATGTTTATGGTCGGAAAGAACTTATTAGTGATCCGACTGAGATTGCCCGGAGATATCTCAAGCATGATTTTGTTATTGATCTTCTCGCCACCCTTCCTTTACCTCAGATCGTTATTTGGTTTATAGTTCCGGCTACAAAAAATTCAACGGCAGCTCATGTAAACCACACATTGTCGCTAATCGTTCTCATTCAGTACATTCCTAGATTGTTTCAGATTTTTCCTTTACAACGCCGAATCTTGAAGACTAGCGGGCTTATAGCAAAAACTGCTTTGGCAGGAGCATTATACAATCTCGGTTTCTACATGCTCGCCAGCCATGTTTTAGGAGCAACATGGTATGTGACTTCTATTCAAAGACAATATGAATGTTGGAGAATAATGTGCAAGAAGGAAATGAATAGAACACATTCTCCTACTTGTAATCCTGATTTTCTTGATTGTACTTCTCTTACTAACCAAGCAAGACAAGCTTGGTTTCGACGAACTCGAGTCCTAACTAATTGTGATGCACTCAATGATAAAAACATATTTCAGTTTGGAATGTTTGCTGATGCTTTTACTGATCATGTTTCTTCCTCAAAATTCATACAAAAATATTTTTACTGCCTTTGGTGGGGTTTGAAAAATCTAAGTTCCTATGGACAAAACATTCAAACTAGTACTTATAGTGGTGAAACATTATTTTGTAGTTTCATTTGCATAGCAGGACTTATTCTGTTTGCACATCTCATTGGTAACATGCAGAATTATCTGCAATCTTCGACCGCAAGACTTGAAGAGTGGAGACTTAGGCAAAAAGATACAGAAGAATGGATGAATCATCGTCAACTTCCTCCAGAACTGCAGGAACGCGTTCGTCGCTTTGTTCAGTACAAATGGCTTGCCACTAGAGGTGTTGACGAAGAAGCCATTTTGAAATCCTTGCCTGTTGACCTTCGCCGCCAGATTCAAAGGCATCTCTGTCTTGATATTGTTCGCCGAGTACCTTTTTTCGGGCAAATGGATGATCAACTTCTAGATGCTATATGCGAACGGCTAGTTTCATCATTGAACACGAAAGACTCATATATAGTTAGAGAAGGTGATCCAGTTAGAGAGATGCTTTTTATCATCAGAGGAAGTATAGAAAGTTCTACAACAGATGGTGGTAGAACAGGATTCTACAATTCAATCACACTAAAACCGGGCGATTTTTGTGGCGAAGAATTGCTAACATGGGCTTTAATGCCAGCATCTAGTCTTAGCCTTCCATCTTCTACAAGAACTGTAAAGTCAATAACTGAAGTTGAAGCATTTGCACTTAGAGCAGAAGATCTCAAATTTGTGTCGAGCCAATTTAAGCGCCTTCATAGCAAGAAACTTCAACATGCTTTCAGATACTATTCTCATCAGTGGAGAGCTTGGGGGGCTTCTTTTATACAAGCGGCGTGGAGGCGTCACCGCAAGCGACAATTGGCAATGGAGTTGTTGGAAAAAGAGAACTTGCTTTATGATGAGAGTGGTGGAGGAGAAAGTTCCATGGGAATGGAAGAGGATAGTGCTAGCCATGGACAAAATTTTGGGGCTACATTTTTGGCTTCAAAATTTGCTGCTAACACTAGGAAAGGAGCAGTTAAAAAGGTTGCAATAATTCCTGATAGTAGCAGTTTGAAGATGCCTAAGATGTTTAAGCCAACAGAGCCTGATTTCTCAACATTTCACGAAGATTAA	2061	0.3969	MNRSDLQQFAASSSSHFRNRFPKSFSLRKKVPWWYQILHPRSKFIAQWNLTFLYACLFALFLDPLYFYIPITGDKACMQTDLVLGVVVTFLRTVADLFFLFHVVLKFRTAFNSPTSHVYGRKELISDPTEIARRYLKHDFVIDLLATLPLPQIVIWFIVPATKNSTAAHVNHTLSLIVLIQYIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGFYMLASHVLGATWYVTSIQRQYECWRIMCKKEMNRTHSPTCNPDFLDCTSLTNQARQAWFRRTRVLTNCDALNDKNIFQFGMFADAFTDHVSSSKFIQKYFYCLWWGLKNLSSYGQNIQTSTYSGETLFCSFICIAGLILFAHLIGNMQNYLQSSTARLEEWRLRQKDTEEWMNHRQLPPELQERVRRFVQYKWLATRGVDEEAILKSLPVDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSYIVREGDPVREMLFIIRGSIESSTTDGGRTGFYNSITLKPGDFCGEELLTWALMPASSLSLPSSTRTVKSITEVEAFALRAEDLKFVSSQFKRLHSKKLQHAFRYYSHQWRAWGASFIQAAWRRHRKRQLAMELLEKENLLYDESGGGESSMGMEEDSASHGQNFGATFLASKFAANTRKGAVKKVAIIPDSSSLKMPKMFKPTEPDFSTFHED*	687

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g5423	686	Gene3D	Helix hairpin bin	373	438	-	-
	Tpr2g5423	686	Pfam	Ion transport protein	48	374	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Tpr2g5423	686	Gene3D	Jelly Rolls	445	565	IPR014710	-
	Tpr2g5423	686	ProSiteProfiles	cAMP/cGMP binding motif profile.	447	521	IPR000595	-
	Tpr2g5423	686	Gene3D	-	75	371	-	-
	Tpr2g5423	686	SUPERFAMILY	cAMP-binding domain-like	376	572	IPR018490	-
	Tpr2g5423	686	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	9	683	-	-
	Tpr2g5423	686	Pfam	Cyclic nucleotide-binding domain	470	557	IPR000595	-
	Tpr2g5423	686	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED	9	683	-	-
	Tpr2g5423	686	SMART	cnmp_10	447	578	IPR000595	-

Showing 1 to 10 of 12 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g5423	Tpr-Chr2	61139764	61143017	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g5423	13	680	Ion Channels	AT3G48010	64.183	0.0	908

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g5423	K05391		-	gmx:100783672	1181.78

Showing 1 to 1 of 1 entries