Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5423 ATGAATAGATCAGATTTACAACAATTTGCAGCATCATCTTCATCTCATTTTCGTAACCGTTTTCCAAAATCATTTTCTCTTCGTAAGAAAGTACCATGGTGGTACCAAATACTTCATCCACGTTCAAAGTTCATTGCACAATGGAACCTTACATTCCTCTATGCATGTCTATTTGCTCTTTTTTTGGATCCTCTTTATTTCTATATTCCGATTACCGGAGACAAAGCTTGTATGCAGACGGATTTGGTTCTCGGTGTGGTTGTCACGTTCTTGCGTACCGTGGCTGATCTATTCTTCTTGTTTCATGTGGTTCTTAAGTTTCGTACCGCGTTCAATTCTCCTACCTCTCATGTTTATGGTCGGAAAGAACTTATTAGTGATCCGACTGAGATTGCCCGGAGATATCTCAAGCATGATTTTGTTATTGATCTTCTCGCCACCCTTCCTTTACCTCAGATCGTTATTTGGTTTATAGTTCCGGCTACAAAAAATTCAACGGCAGCTCATGTAAACCACACATTGTCGCTAATCGTTCTCATTCAGTACATTCCTAGATTGTTTCAGATTTTTCCTTTACAACGCCGAATCTTGAAGACTAGCGGGCTTATAGCAAAAACTGCTTTGGCAGGAGCATTATACAATCTCGGTTTCTACATGCTCGCCAGCCATGTTTTAGGAGCAACATGGTATGTGACTTCTATTCAAAGACAATATGAATGTTGGAGAATAATGTGCAAGAAGGAAATGAATAGAACACATTCTCCTACTTGTAATCCTGATTTTCTTGATTGTACTTCTCTTACTAACCAAGCAAGACAAGCTTGGTTTCGACGAACTCGAGTCCTAACTAATTGTGATGCACTCAATGATAAAAACATATTTCAGTTTGGAATGTTTGCTGATGCTTTTACTGATCATGTTTCTTCCTCAAAATTCATACAAAAATATTTTTACTGCCTTTGGTGGGGTTTGAAAAATCTAAGTTCCTATGGACAAAACATTCAAACTAGTACTTATAGTGGTGAAACATTATTTTGTAGTTTCATTTGCATAGCAGGACTTATTCTGTTTGCACATCTCATTGGTAACATGCAGAATTATCTGCAATCTTCGACCGCAAGACTTGAAGAGTGGAGACTTAGGCAAAAAGATACAGAAGAATGGATGAATCATCGTCAACTTCCTCCAGAACTGCAGGAACGCGTTCGTCGCTTTGTTCAGTACAAATGGCTTGCCACTAGAGGTGTTGACGAAGAAGCCATTTTGAAATCCTTGCCTGTTGACCTTCGCCGCCAGATTCAAAGGCATCTCTGTCTTGATATTGTTCGCCGAGTACCTTTTTTCGGGCAAATGGATGATCAACTTCTAGATGCTATATGCGAACGGCTAGTTTCATCATTGAACACGAAAGACTCATATATAGTTAGAGAAGGTGATCCAGTTAGAGAGATGCTTTTTATCATCAGAGGAAGTATAGAAAGTTCTACAACAGATGGTGGTAGAACAGGATTCTACAATTCAATCACACTAAAACCGGGCGATTTTTGTGGCGAAGAATTGCTAACATGGGCTTTAATGCCAGCATCTAGTCTTAGCCTTCCATCTTCTACAAGAACTGTAAAGTCAATAACTGAAGTTGAAGCATTTGCACTTAGAGCAGAAGATCTCAAATTTGTGTCGAGCCAATTTAAGCGCCTTCATAGCAAGAAACTTCAACATGCTTTCAGATACTATTCTCATCAGTGGAGAGCTTGGGGGGCTTCTTTTATACAAGCGGCGTGGAGGCGTCACCGCAAGCGACAATTGGCAATGGAGTTGTTGGAAAAAGAGAACTTGCTTTATGATGAGAGTGGTGGAGGAGAAAGTTCCATGGGAATGGAAGAGGATAGTGCTAGCCATGGACAAAATTTTGGGGCTACATTTTTGGCTTCAAAATTTGCTGCTAACACTAGGAAAGGAGCAGTTAAAAAGGTTGCAATAATTCCTGATAGTAGCAGTTTGAAGATGCCTAAGATGTTTAAGCCAACAGAGCCTGATTTCTCAACATTTCACGAAGATTAA 2061 0.3969 MNRSDLQQFAASSSSHFRNRFPKSFSLRKKVPWWYQILHPRSKFIAQWNLTFLYACLFALFLDPLYFYIPITGDKACMQTDLVLGVVVTFLRTVADLFFLFHVVLKFRTAFNSPTSHVYGRKELISDPTEIARRYLKHDFVIDLLATLPLPQIVIWFIVPATKNSTAAHVNHTLSLIVLIQYIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGFYMLASHVLGATWYVTSIQRQYECWRIMCKKEMNRTHSPTCNPDFLDCTSLTNQARQAWFRRTRVLTNCDALNDKNIFQFGMFADAFTDHVSSSKFIQKYFYCLWWGLKNLSSYGQNIQTSTYSGETLFCSFICIAGLILFAHLIGNMQNYLQSSTARLEEWRLRQKDTEEWMNHRQLPPELQERVRRFVQYKWLATRGVDEEAILKSLPVDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSYIVREGDPVREMLFIIRGSIESSTTDGGRTGFYNSITLKPGDFCGEELLTWALMPASSLSLPSSTRTVKSITEVEAFALRAEDLKFVSSQFKRLHSKKLQHAFRYYSHQWRAWGASFIQAAWRRHRKRQLAMELLEKENLLYDESGGGESSMGMEEDSASHGQNFGATFLASKFAANTRKGAVKKVAIIPDSSSLKMPKMFKPTEPDFSTFHED* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5423 686 Gene3D Helix hairpin bin 373 438 - -
Tpr2g5423 686 Pfam Ion transport protein 48 374 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr2g5423 686 Gene3D Jelly Rolls 445 565 IPR014710 -
Tpr2g5423 686 ProSiteProfiles cAMP/cGMP binding motif profile. 447 521 IPR000595 -
Tpr2g5423 686 Gene3D - 75 371 - -
Tpr2g5423 686 SUPERFAMILY cAMP-binding domain-like 376 572 IPR018490 -
Tpr2g5423 686 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 9 683 - -
Tpr2g5423 686 Pfam Cyclic nucleotide-binding domain 470 557 IPR000595 -
Tpr2g5423 686 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 9 683 - -
Tpr2g5423 686 SMART cnmp_10 447 578 IPR000595 -
Tpr2g5423 686 CDD CAP_ED 447 578 IPR000595 -
Tpr2g5423 686 SUPERFAMILY Voltage-gated potassium channels 40 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5423 Tpr-Chr2 61139764 61143017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5423 13 680 Ion Channels AT3G48010 64.183 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5423 K05391 - gmx:100783672 1181.78