Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5412 ATGGAGGATTCTTCTTCAGCAGCTGAAGATACCAAGAGTTGTCCCCGTGGTCACTGGCGACCCGTTGAAGACGAAAAGCTTCGACAACTTGTTGAACAATATGGTGCTCAAAATTGGAATTCAATTGCTGAAAAACTCCAAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAATTAGACCCAAGAATTAATAGAAGACCTTTCACAGAAGAGGAAGAAGAGAGACTACTCGCAGCTCATCGTATTCATGGAAACAAATGGGCATTAATCGCGCGACTTTTCCCCGGAAGAACTGATAATGCTGTGAAGAATCATTGGCATGTTGTTATGGCTAGAAAACAAAGGGAACAATCTAAGTTATGTGGTAAAAGAAGTTTTCAAGACCTTTATAACAACTCTTCTTCTTCTAGCATACTTAATTTCCCTTACAAGACGCGAATCGGATATGAAAATGGAAAATTCTATCAATTTCAGAACAATCTTGATACTTCTTCTTCTAGTTCTCTTGCATCTTGGAACTTTGCTTCTGTCTTAACAAAAAATACTACTACTACTACTACTCTTTTTCCGGATAATTCTCTCGTGGAAAAATTATCCGATTGTTCTAAAAGTTCAGATAGATCATTTCTCTACAAATTTTGTCAAAATCCACCATTCTCATCATCACTTCCAAATTACAAGAGAATTGTTCCAAATGCTTTTGGTTTTTTTAATCCTTCTGATGATGGAACGATAAGAAAGGATTTGATGAGTAGTTTACGCGATAATTCATCGACATTAATCCCAAACTTAAAAGCTTCCAAGGAGAAAGAGCAAGATCATGAAGTTGAAATTGAGAAGCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGCTCTTCATCATAATCTATTTAATTAA 915 0.3628 MEDSSSAAEDTKSCPRGHWRPVEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQREQSKLCGKRSFQDLYNNSSSSSILNFPYKTRIGYENGKFYQFQNNLDTSSSSSLASWNFASVLTKNTTTTTTLFPDNSLVEKLSDCSKSSDRSFLYKFCQNPPFSSSLPNYKRIVPNAFGFFNPSDDGTIRKDLMSSLRDNSSTLIPNLKASKEKEQDHEVEIEKHKEVPFIDFLGVGALHHNLFN* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5412 304 MobiDBLite consensus disorder prediction 1 20 - -
Tpr2g5412 304 PANTHER MYB PROTEIN-RELATED 5 297 - -
Tpr2g5412 304 Gene3D - 16 67 - -
Tpr2g5412 304 Coils Coil 267 287 - -
Tpr2g5412 304 Gene3D - 70 130 - -
Tpr2g5412 304 CDD SANT 19 60 IPR001005 -
Tpr2g5412 304 Pfam Myb-like DNA-binding domain 19 79 - -
Tpr2g5412 304 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr2g5412 304 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Tpr2g5412 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Tpr2g5412 304 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Tpr2g5412 304 SMART sant 15 64 IPR001005 -
Tpr2g5412 304 SMART sant 67 115 IPR001005 -
Tpr2g5412 304 CDD SANT 79 113 IPR001005 -
Tpr2g5412 304 PANTHER TRANSCRIPTION FACTOR MYB56 5 297 - -
Tpr2g5412 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5412 Tpr-Chr2 60990236 60992005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5412 14 147 MYB Transcription Factor Family AT1G17950 64.667 2.71e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g5412 Myb_DNA-bind_6 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5412 K09422 - gmx:100802283 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5412 2 60990236 60992005 Tpr2g5412 2 60990236 60992005 ECH