Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5401 ATGTCGAGTACAGCTGGTCAAGTCATCAAATGCAAAGCTGCTGTTGCATGGGAGGCTGGGAAGCCGCTGGTGATCGAAGAAGTAGAGGTGGCGCCACCGCAAGCCGGTGAAGTTCGTCTCAAGATACTCTTCACCTCCCTTTGCCATACTGATGTTTACTTCTGGGAAGCTAAGGGTCAAACTCCGTTATTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGCGAGGGCGTGACTCACCTGAAACCAGGGGACAAGGCCCTGCCTGTATTCACAGGGGAGTGTGGGGAATGTCCACATTGTAAGTCAGAGGAGAGTAACATGTGTAATCTTCTTAGGATCAACACAGACAGGGGTGTCATGATCAATGACAACAAGTCAAGATTCTCTATTAAGGGACAACCCGTACACCATTTTGTCGGTACTTCTACATTCAGCGAGTACACTGTCGTCCATGCCGGTTGTGTTGCAAAGATCAACCCTGATGCACCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTCTTGGTGCTACTGTCAACGTTGCAAAACCAAAACCCGGCTCATCCGTTGCTATATTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATATCTGGTGCATCGCGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCAAAGAAGTTTGGGGTGAATGAGTTTGTGAACCCAAAAGATCATGACAAACCTGTACAACAGGTTATTGCTGAAATGACGGATGGAGGTGTAGATCGTGCTGTTGAATGTACTGGCAGCATTCAAGCTATGATCTCAGCATTTGAATGTGTACATGATGGTTGGGGTGTTGCCGTACTTGTTGGAGTGCCAAGCAAAGATGATGCATTCAAAACTCATCCTATGAATTTATTGAATGAAAGGACTCTTAAGGGTACCTTCTATGGTAACTACAAGCCGCGAACCGATCTTCCTAATGTTGTAGAGAAGTACATGAAAGGGGAGTTGGAACTTGAGAAATTCATCACTCACACAGTACCATTTTCAGAGATTAACAAAGCTTTTGATTTGATGCTGAAAGGGGAGTCCATCAGATGTATCATCAAAATGGAGGAGTAA 1143 0.4549 MSSTAGQVIKCKAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDKALPVFTGECGECPHCKSEESNMCNLLRINTDRGVMINDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKPVQQVIAEMTDGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPMNLLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKAFDLMLKGESIRCIIKMEE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5401 380 CDD alcohol_DH_plants 9 376 - -
Tpr2g5401 380 SUPERFAMILY GroES-like 4 187 IPR011032 -
Tpr2g5401 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Tpr2g5401 380 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Tpr2g5401 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Tpr2g5401 380 SUPERFAMILY GroES-like 328 376 IPR011032 -
Tpr2g5401 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Tpr2g5401 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Tpr2g5401 380 Gene3D - 19 370 - -
Tpr2g5401 380 Gene3D - 183 321 - -
Tpr2g5401 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5401 Tpr-Chr2 60838989 60842506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5401 1 370 Monolignol Biosynthesis Gene Families AT1G72680 24.933 2.20e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5401 K18857 - gmx:100783858 724.161