Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5395 ATGGGAATTATTAGAATGAAAAAGTGTTGGTTTGTTGGGGTGTTGTTGATTGTAGTGACCTTGTTAGGGGTTGAAGGGTACCCAATTGAGGATCTAGTTGTAAGACTACCTGGCCAACCTAAGGTTGAATTCAAGCAATATGCTGGCTATGTTGATATTGATGTAAAACATGGGAGGAGTCTCTTTTACTATTTTGTTGAGGCTGAACATGACCCTCACAAAAAGCCTCTCACACTTTGGCTCAATGGAGGTCCGGGATGCTCCTCACTTGGAGGAGGCGCTTTTACTGAACTGGGTCCGTTTTATCCTACTGGTGATGGACGTGGTGTACGAAGAAATTCAAAGTCATGGAATAGAGCTTCCAATCTCCTCTTTGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATATTCAAACACAACTTCTGATTACAACACTGGTGATACCAACACAGCCAATGATATGCTTTTGTTCTTCCTGAAATGGTATGAGAAGTTTCCTTCATACAAATCAAGGAAGTTGTTTCTTACCGGAGAAAGCTATGCAGGACACTACATTCCTCAGTTAGCCAATGCAATTCTTGATTATAATGCTCATTCAACCAATTTCAAGTTCAATATAAAAGGACTCGCCATTGGAAATCCACTTTTGAATATGGGTCGTGATACACAAGCAACATATGAATACTTCTGGTCACACGGAATGATTTCTGATGAAATTGGCCGTACCATTAAGAACGATTGCAATTTCAATGGTTTTACCGATTCAGGTTCTCATAATGTATCCAAATCGTGCAACAAAGCCCTAAACGAGACTAATAAAATTGTGAGCGACTATGTAGACAACTACGATGTGATTCTCGATGTTTGTTATCCGGCCATAGCTCTACAAGAAATCCTATTGAGAAAAATGGCTACTAAAATTAGTTTAAGTGTAGATGTTTGTATGGGTTATGAAAGTGATTTCTACCTTAACTCCCCAGAGGTTCAAAAGGCTCTCCATGCCAATCGTACCAAACTTCCATATCCATGGTCCATGTGCAGTAATGTTTTAAATTATAGCGAAACGGATCCTAACATTGATATGCTTCCAATTCTTAAACGAATAGTTCAAAACCATATTCCGGTATTGATTTACAGTGGAGACCAAGATTCAGTTGTACCATTATTAGGTACTCGAACACTCATTCGCGAGTTAGCTCATGACCTGAAATTTAAGATCACCGACCCATATAGAGTTTGGTTTCACAATGGCCAGGTTGGAGGTTGGGTAACTGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCAGGTCATATGGTACCATATGCACAACCTTCTAGAGCCTTACATTTGTTTAGTTCCTTTGTGGGTAATAGGAGACTACCAAACACTACTACCCCTTCAATTGGAGGATGA 1422 0.4008 MGIIRMKKCWFVGVLLIVVTLLGVEGYPIEDLVVRLPGQPKVEFKQYAGYVDIDVKHGRSLFYYFVEAEHDPHKKPLTLWLNGGPGCSSLGGGAFTELGPFYPTGDGRGVRRNSKSWNRASNLLFVESPAGVGWSYSNTTSDYNTGDTNTANDMLLFFLKWYEKFPSYKSRKLFLTGESYAGHYIPQLANAILDYNAHSTNFKFNIKGLAIGNPLLNMGRDTQATYEYFWSHGMISDEIGRTIKNDCNFNGFTDSGSHNVSKSCNKALNETNKIVSDYVDNYDVILDVCYPAIALQEILLRKMATKISLSVDVCMGYESDFYLNSPEVQKALHANRTKLPYPWSMCSNVLNYSETDPNIDMLPILKRIVQNHIPVLIYSGDQDSVVPLLGTRTLIRELAHDLKFKITDPYRVWFHNGQVGGWVTEYGNLLTFATVRGAGHMVPYAQPSRALHLFSSFVGNRRLPNTTTPSIGG* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5395 473 PANTHER CARBOXYPEPTIDASE 11 467 - -
Tpr2g5395 473 Pfam Serine carboxypeptidase 38 459 IPR001563 GO:0004185|GO:0006508
Tpr2g5395 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 11 467 IPR001563 GO:0004185|GO:0006508
Tpr2g5395 473 Gene3D - 314 350 - -
Tpr2g5395 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Tpr2g5395 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Tpr2g5395 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Tpr2g5395 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Tpr2g5395 473 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Tpr2g5395 473 Gene3D alpha/beta hydrolase 29 290 IPR029058 -
Tpr2g5395 473 SUPERFAMILY alpha/beta-Hydrolases 34 463 IPR029058 -
Tpr2g5395 473 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
Tpr2g5395 473 Gene3D - 361 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5395 Tpr-Chr2 60795970 60800258 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5395 319 463 Calmodulin-binding Proteins AT2G22960 30.345 6.72e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5395 K16297 - gmx:100815723 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5395 2 60795970 60800258 Tpr2g5395 2 60795970 60800258 ECH