Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5393 ATGGATATGAAGTGTGTTTATTGTGAGGGAATTGAAGTTATTAGAATGGAAAAGTGTTGGTTTTTTGGGGTGTTGATTGTGGTAGGCTATGGTTGCTTCCTAAGGGACATTGTTGGGGTAGAAGGGTACCCAATTGAGGATTTGATTATGAAGTTGCCAGGTCAACCTAAGGTTGAATTCAGTCAATATGCAGGTTATGTTGATATTGATGTAAAACATGGGAGGAGTCTCTTCTACTATTTTGTTGAGGCTGACCAATACCCTCACAAAAAGCCCCTCACACTTTGGCTCAATGGAGGTCCAGGATGTTCCTCAATTGGAGGAGGTGCCTTCACTGAATTGGGTCCGTTTTATTCTACCGGCGATGGACGTGGTTTACAAAGAAATTCAAATTCTTGGAATAAAGTTTCTAATCTCCTCTTTGTGGAGTCTCCTATCGGAGTTGGTTGGTCATACTCAAATATAACTTCTGATTATAATAACTATGATGACGCTTCCACAGCCAATGATATGCTCTTGTTCATGTTGAAATGGTACGAGAAATTTCCTTCATACAAATCAAGAAACTTGTTTCTTACTGGAGAAAGTTACGCAGGACATTTCATTCCTCAGTTAGCCAATATTCTTCTTGATTATAATTCTCATTCCACTACTCTCAAATTCAATATAAAAGGAGTCGCGATTGGGAACCCACTTCTAAAATTGGATCGTGATACACAAGCAATATATGAATATTTTTGGTCACATGGAATGATTTCAGATGAAATTGGCCTCTCCATTATGAATTGCAATTATGATAACTTAACTAAATCATGCAAAGATGCTATGATTGATGCTCAAGATATTGTGGGTGACTATATAGATAGCTATGATGTGATTCTTGATGTTTGTTATCCATCCATAGCTGAGCAAGAACTAAGATTGAAAAAAATGGCTACTAAAATAAGTTTGAGTGTAGATGTTTGTATGGATTCTGAAATACATTTTTACCTCAATCTTCCGGAGGTTCAAAAAGCTCTTCATGCTAACCGTACTAATCTGTCATACCCATGGTCCATGTGCAGCGATGTTTTGGATTACAACAATGCAGATCATGATATTAATATGCTTCCGGTTCTCAAACGTATAGTTCAAAACCATATTCCAGTATGGGTTTATAGCGGAGATCAAGATTCAGTTGTGCCATTACTAGGTTCTCGAACACTCATTCGTGAACTAGCTATTGATCTTAAGTTCAATATTACAGATCCATATAGAGTTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTGACTGAATATGGAAATTTGTTGACTTTTGCCACCGTAAGAGGAGCAGGCCATATGGTATCATATGCACAACCTTCTAGAGCATTACATCTATTTAGTTCATTTGTGAGTGGGAGAAAATTGCCAAACACATCTCAACCTTCGATTATTGATGGAATTACATATGGATAA 1461 0.3765 MDMKCVYCEGIEVIRMEKCWFFGVLIVVGYGCFLRDIVGVEGYPIEDLIMKLPGQPKVEFSQYAGYVDIDVKHGRSLFYYFVEADQYPHKKPLTLWLNGGPGCSSIGGGAFTELGPFYSTGDGRGLQRNSNSWNKVSNLLFVESPIGVGWSYSNITSDYNNYDDASTANDMLLFMLKWYEKFPSYKSRNLFLTGESYAGHFIPQLANILLDYNSHSTTLKFNIKGVAIGNPLLKLDRDTQAIYEYFWSHGMISDEIGLSIMNCNYDNLTKSCKDAMIDAQDIVGDYIDSYDVILDVCYPSIAEQELRLKKMATKISLSVDVCMDSEIHFYLNLPEVQKALHANRTNLSYPWSMCSDVLDYNNADHDINMLPVLKRIVQNHIPVWVYSGDQDSVVPLLGSRTLIRELAIDLKFNITDPYRVWFHKGQVGGWVTEYGNLLTFATVRGAGHMVSYAQPSRALHLFSSFVSGRKLPNTSQPSIIDGITYG* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5393 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 141 IPR001563 GO:0004185|GO:0006508
Tpr2g5393 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 142 152 IPR001563 GO:0004185|GO:0006508
Tpr2g5393 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 178 203 IPR001563 GO:0004185|GO:0006508
Tpr2g5393 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185|GO:0006508
Tpr2g5393 486 SUPERFAMILY alpha/beta-Hydrolases 47 471 IPR029058 -
Tpr2g5393 486 Gene3D - 369 468 - -
Tpr2g5393 486 Gene3D alpha/beta hydrolase 45 298 IPR029058 -
Tpr2g5393 486 ProSitePatterns Serine carboxypeptidases, serine active site. 192 199 IPR018202 GO:0004185
Tpr2g5393 486 PANTHER CARBOXYPEPTIDASE 20 475 - -
Tpr2g5393 486 Gene3D - 322 359 - -
Tpr2g5393 486 Pfam Serine carboxypeptidase 54 468 IPR001563 GO:0004185|GO:0006508
Tpr2g5393 486 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Tpr2g5393 486 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 20 475 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5393 Tpr-Chr2 60769864 60779866 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5393 329 471 Calmodulin-binding Proteins AT2G22960 29.371 7.55e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5393 K16297 - gmx:100803335 759.599