Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5378 ATGTTCCAACAAAGACATAACAATATTAGTAGCACCGAGCTAGATCAAATGTTACATATGCTAACTTCTTCTAATTCTTCTATTCCAATGCCATTTCCAACAACCTCAATGGACTCAAATTCAAAGTGGAAACCAAACATTGAAATAGCTCCTAATTGTCCTCGTTGTGCTTCAACTCACACAAAATTTTGTTACTACAACAATTACAGCTTGTCACAGCCAAGATATTTTTGCAAAGGTTGTCGACGCTATTGGACTAAAGGTGGCTCTCTTCGAAATGTTCCGGTTGGTGGTGGATGCCGTAAAACCCGTCGTGGAAAGGCGGTTAGGAATTCTCAGAATTCTGACCGTCTTTCCGCGAATGGTTCTGTTGATGATGGAGATCGTCAACAGAATCAAAATGATGGGTCGCGTGATATAGATATGGCGGTTGTTTTCGCCAAATTCTTAAACCAAAATCCAAATAGTACTACTACTAATACTACTCATCATGGTGATGAGGAATTAGAAATTGAGAGTGAGCCTAACAATTCTTCTTCAAACAATGTTAACAATTTGTCGACACCGGATAGCGTTGAAACAGACAACGATGCAGTGGTTCAGAGTCAGAATTATCCTTTTGATCAAGAATTGAGTTTGAGTGGAATTGAATATGATCAATTTGAAGGGTTACTAGGTGTTGATGAAGATGTGGTACAACAAGATGTTCTATGGTCTGAATCTGATGCTATGAATATGATGGTGTCATCTTCAAATAATTATACATGGCAACAACCATCTACCATGATGCAAATGGAATTGGATTATTCAATGTCATTGAATGAAGTTGGTGGTATTAATCATGATCAATTATTACCTCTTAATGTGAATTCAAATTCTACTAATGTCAATTTGATAAGTGATCAAAGTTGGATGAGTAATTCTTGGGATTCTTTTGATCTTGCAACTATGGAAATCTTCTCATCAAGTTCAAGACCTTAA 981 0.368 MFQQRHNNISSTELDQMLHMLTSSNSSIPMPFPTTSMDSNSKWKPNIEIAPNCPRCASTHTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRGKAVRNSQNSDRLSANGSVDDGDRQQNQNDGSRDIDMAVVFAKFLNQNPNSTTTNTTHHGDEELEIESEPNNSSSNNVNNLSTPDSVETDNDAVVQSQNYPFDQELSLSGIEYDQFEGLLGVDEDVVQQDVLWSESDAMNMMVSSSNNYTWQQPSTMMQMELDYSMSLNEVGGINHDQLLPLNVNSNSTNVNLISDQSWMSNSWDSFDLATMEIFSSSSRP* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5378 326 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 33 279 - -
Tpr2g5378 326 MobiDBLite consensus disorder prediction 101 137 - -
Tpr2g5378 326 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Tpr2g5378 326 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 279 IPR045174 GO:0003700|GO:0006355
Tpr2g5378 326 Pfam Dof domain, zinc finger 51 104 IPR003851 GO:0003677|GO:0006355
Tpr2g5378 326 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Tpr2g5378 326 MobiDBLite consensus disorder prediction 112 130 - -
Tpr2g5378 326 MobiDBLite consensus disorder prediction 151 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5378 Tpr-Chr2 60607355 60608581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5378 32 249 C2C2-Dof Transcription Factor Family AT1G21340 41.949 3.17e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr2g5378 zf-Dof 5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5378 2 60607355 60608581 Tpr2g5378 2 60607355 60608581 ECH