Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5375 ATGATGTCGCTTGATAACCGAACCTGTTCTGTTATGGATTCCATTTCCAACGGGGCTTGTAGTTACTGGGCCAAACCACTGGATGAAAATCTATTCAAAAAAATGTGGCAACATGTCGTGCGGCAACATCTAGTGCAAAAGGAAAGCGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGAACATCTAGTGCAAAAGGAAAGCGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGATGATGAGGTTCATGTTTCTAAACAACCTCCGGCAAAGAAAGCTCGTTTCTCTTGGACAGATGATTTGCACCAAAAATTTGTGTCGGCCGTGAATCATCTTGGGATTAAAAATGCAAAGCCTAAAAAAGTTATGAAGATCATGGATTGTCCTGGCTTGGAATTACAGCATGTAGCTAGTCATTTGCAGAAATATAAAATGTATTTAGATGGTGGGATAAAAAATTCAAAGATGAATCAGAAGAACAATGAAACACAAGCACAGGATCAAGAAATTGATGAAACCGAAGTATTTTTTAGCTTGACTGATTTTTTCCCCGATCTTAACGATGATGATATACACAATAACAACTATGCTGTTTCAGCTGAGAGCATTGATTCCCCTAGCACCTCTCTTCCACAGCTTGGGCAATATTCAATGACACCACCTAATCAATGTGACGATTCCGACATATTTTCTAATTTGACCGATTTATTCCCCAATCTTAACGATGAGATACACAATGGGATGTGGTGA 747 0.3963 MMSLDNRTCSVMDSISNGACSYWAKPLDENLFKKMWQHVVRQHLVQKESEAKGLKKRGREHLVQKESEAKGLKKRGRDDEVHVSKQPPAKKARFSWTDDLHQKFVSAVNHLGIKNAKPKKVMKIMDCPGLELQHVASHLQKYKMYLDGGIKNSKMNQKNNETQAQDQEIDETEVFFSLTDFFPDLNDDDIHNNNYAVSAESIDSPSTSLPQLGQYSMTPPNQCDDSDIFSNLTDLFPNLNDEIHNGMW* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5375 248 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 91 143 IPR006447 GO:0003677
Tpr2g5375 248 SUPERFAMILY Homeodomain-like 89 146 IPR009057 -
Tpr2g5375 248 Gene3D - 88 148 - -
Tpr2g5375 248 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 203 IPR045279 GO:0009736
Tpr2g5375 248 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 1 203 - -
Tpr2g5375 248 MobiDBLite consensus disorder prediction 50 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5375 Tpr-Chr2 60564890 60566918 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5375 1 146 Response Regulator Gene Family AT2G01760 38.323 3.52e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr2g5375 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5375 - K14491 mtr:MTR_4g021760 148.288