Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5373 ATGATGTCGCTTGATAACCGAACCTGTTCTGTTATGGATTCCATTTCTAACGGGGCTTGTAGTTACTGGGCCAAACCACTGGATGAAAATCTATTCAAAAATATGTGGCAACATGTCGTGCGGCAACATCTAGTGCAAAAGGAAAGCGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGAACATCTAGTGCAAACGGAAAGCGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGATGATGAGGTTCATGTTTCTAAACAACCTCCGGTAAAGAAAGCTCGTTTCTCTTGGACAGATGATTTGCACCAAAAATTTGTGTCGGTCGTGAATCATCTTGGGATTAAAAATGCAAAGCCTAAAAAAGTTCTGAAGATCATGGATTGTCCTGGCTTGGAATTACAGCATGTAGCTAGTCATTTGCAGAAATATAAAATGTATTTAGATGGTGGGATAAAAAATTCAAAGATGAAACAGAAGAACAATGAAACACAAGCACAGGATCAAGAAATTGATGAAACCGAAGTATTTTTTAGCTTGACTGATTTTTTCCCCGATCTTAACGATGATGATATACACAATAACAACTATGCTGTTTCAGCTGAGAGCATTGATTCCCCTAGCACCTCTCTTCCACAGCTTGGGCAATATTCAATGACACCACCTGATCAATGTGACGATTCCGACATATTTTCTAATTTGACCGATTTATTCCCCAATCTTAACGATGAGATACACAATGGGATGTGGTGA 747 0.3963 MMSLDNRTCSVMDSISNGACSYWAKPLDENLFKNMWQHVVRQHLVQKESEAKGLKKRGREHLVQTESEAKGLKKRGRDDEVHVSKQPPVKKARFSWTDDLHQKFVSVVNHLGIKNAKPKKVLKIMDCPGLELQHVASHLQKYKMYLDGGIKNSKMKQKNNETQAQDQEIDETEVFFSLTDFFPDLNDDDIHNNNYAVSAESIDSPSTSLPQLGQYSMTPPDQCDDSDIFSNLTDLFPNLNDEIHNGMW* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5373 248 SUPERFAMILY Homeodomain-like 89 146 IPR009057 -
Tpr2g5373 248 Gene3D - 89 148 - -
Tpr2g5373 248 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 1 201 - -
Tpr2g5373 248 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 201 IPR045279 GO:0009736
Tpr2g5373 248 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 91 143 IPR006447 GO:0003677
Tpr2g5373 248 MobiDBLite consensus disorder prediction 67 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5373 Tpr-Chr2 60557064 60559184 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5373 1 146 Response Regulator Gene Family AT2G01760 38.922 1.85e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr2g5373 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5373 - K14491 mtr:MTR_4g021760 147.132