Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5367 ATGGACACACAACAAAAACAGAGTATCCTATGCAAATACACAGAACACCACACTGTTACAAAGAAAATCATTACAACAACAAAGAAAAACAGTAACAACAACAACAATAACACAACCATAAACCCAAGAGTTGTACGAATATCAGTCACCGACCCAGACGCAACCGACTCATCCGGCGATGAAAGAGAAACACAACCTTTCTTCAGAAACAGAACAAAGCGTTATATAAACCGTATTGAAATCGAAACCACTGTAAAACAAACCGTCAACAGAAAAAGACCTGCCGGAGAATCATCTGTTAAACGGCCGGCGAAGGCGGCGAAGGTTCCTATTGTCAATAACGGTAAAAAGTTCCGCGGTGTACGACAAAGACCGTGGGGAAAATGGGCTGCAGAGATTCGAGATCCTGCAAGAAGGGTTCGTCTTTGGTTAGGTACTTTCGAAACTGCAGAAGAAGCTGCCATGGTTTACGACAATGCCGCGATTAAGCTTCGTGGACCAGACGCTTTAACAAATTTCGGTACACCGCCGCAGAAAGAAATTCCGGTTGAACCCACCACCGTGAAACACGAAATGAAACCAGAAATTAAACCAGAAATGAAGGTAGTTGTGGAACAAGAAACCGAAGCTTGTCGTTCTGGTAACTCCGGTTATGATTCCGGTGAAGAACGATGTATTCCACTTTCATCACCGACTTCTGTTTTAAATTTCCGATCAAACTCCGGTGAGTCACAAGAATCGGAGGAGAAAAGTGAAGCGTGTGAAGTGTTTAGAGAGTGTGAAGGTGAAACAAATTTGTTTAACGAAACGGCGTCGTTTTTTCAATCTGATATGCTATGTTTTGATGACGTGTTCAATTTTGAAACTCCAGAGTTTCCTTTGTTGTTTGAAGAAGAACAGAACAAAATGATGTTTGATGATACGACACCGTTTTTGTTTGATGAAGAAGATTTAAGTAAAAGCATTGTTCTTGCTGACTCACTCATTGATTTTGATAAAGCATGTTTTCCTTCTTCATCATCATCTTTGTGCCAGGTGGATGATTTCTTTCAAGATATTTTGTTAGCCTCAGATCCTCTCGTTGTTCTTTGA 1092 0.4093 MDTQQKQSILCKYTEHHTVTKKIITTTKKNSNNNNNNTTINPRVVRISVTDPDATDSSGDERETQPFFRNRTKRYINRIEIETTVKQTVNRKRPAGESSVKRPAKAAKVPIVNNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFGTPPQKEIPVEPTTVKHEMKPEIKPEMKVVVEQETEACRSGNSGYDSGEERCIPLSSPTSVLNFRSNSGESQESEEKSEACEVFRECEGETNLFNETASFFQSDMLCFDDVFNFETPEFPLLFEEEQNKMMFDDTTPFLFDEEDLSKSIVLADSLIDFDKACFPSSSSSLCQVDDFFQDILLASDPLVVL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5367 363 CDD AP2 116 173 IPR001471 GO:0003700|GO:0006355
Tpr2g5367 363 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 356 - -
Tpr2g5367 363 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Tpr2g5367 363 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Tpr2g5367 363 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Tpr2g5367 363 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Tpr2g5367 363 SUPERFAMILY DNA-binding domain 117 174 IPR016177 GO:0003677
Tpr2g5367 363 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Tpr2g5367 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 9 356 - -
Tpr2g5367 363 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5367 Tpr-Chr2 60498369 60500294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5367 11 362 AP2-EREBP Transcription Factor Family AT4G27950 38.606 2.06e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr2g5367 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5367 - - gmx:100807598 339.732