Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5364 ATGGATGAAAACTTATATAACATTTTTGAAGACAGAACAGAATTTGGAAACAGCAACAGTTTTGGTGTAACAGATGATGATCTTTTTGCCATTTTAGAAAGTCTAGAAGATTTCACTGATTTTCCTCTCATCAAAGAATCTGAAGCTGTTACTCCAAAAGAAAATGAGGACAGTTCGACATCGAGATTGGTGTCTCAAAAATCAACCACTTCACTACAAGATTCTGAAACTGAACTTGAAACAGAACACAAAAGCAAGAGACAGAAGCTTACACCAACTTTGTTAGAGGAACAGATTAACAATGTTGGACAACAAAGGGTTTCTCACATTACTGTGGAGAGAAACAGAAGAAAGCAAATGAATGAGCATTTGTCTGTTTTAAGGTCTCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCAATAATTGGAGGTGTAGTTGATTACATCAATGAGTTACAACAACTACTCCAAGCTCTTGAAGCCAAGAAACAAAGAAAAGTATATAATGAAGTACTAAGTCCAAGACCTTCACAACTAAGTCCAAGGTTAGTTTCAAGTCCAAGACCTTCACCACTAAGCCCAAGAAAACCACCTCTAAGTCCAAGACTAAACTTACCAATTAGTCCAAGAACTCCACAACCAAGTAGCCCTTACAAGCCAAGATTACAACAAAGCTACATTGCACTTTCACCTCTTGATCCATCTCCTACTACTTCCTCTGCTTCCTCTGTCAATGATAATATCAATGAGCTTGTTGCAAATTCTAAGTCACCTATTGCTGATGTGGAGGTCAAGTTTTCAGGTCCTCATGTTCTTTTGAAAACTGTTTCTCAAAGAATTCCAGGTCAAGCTTTGAAGATTATATCTGCACTTGAAGATCTTGCACTTGAAATTCTTCATGTTAACATTAATAGTACTCCTGATGATACCATGATGAACTCCTTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCGGAAGAACTAGCTCAACAAATTCAGCAAACATTCTGCTAA 1029 0.3722 MDENLYNIFEDRTEFGNSNSFGVTDDDLFAILESLEDFTDFPLIKESEAVTPKENEDSSTSRLVSQKSTTSLQDSETELETEHKSKRQKLTPTLLEEQINNVGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQALEAKKQRKVYNEVLSPRPSQLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPSSPYKPRLQQSYIALSPLDPSPTTSSASSVNDNINELVANSKSPIADVEVKFSGPHVLLKTVSQRIPGQALKIISALEDLALEILHVNINSTPDDTMMNSFTIKIGIECQLSAEELAQQIQQTFC* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5364 342 Coils Coil 148 172 - -
Tpr2g5364 342 MobiDBLite consensus disorder prediction 190 219 - -
Tpr2g5364 342 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 1 342 - -
Tpr2g5364 342 PANTHER TRANSCRIPTION FACTOR FAMA 1 342 IPR044283 GO:0003700|GO:0010052
Tpr2g5364 342 MobiDBLite consensus disorder prediction 49 90 - -
Tpr2g5364 342 CDD bHLH_AtFAMA_like 108 180 - -
Tpr2g5364 342 Gene3D - 96 170 IPR036638 GO:0046983
Tpr2g5364 342 MobiDBLite consensus disorder prediction 76 90 - -
Tpr2g5364 342 MobiDBLite consensus disorder prediction 56 75 - -
Tpr2g5364 342 MobiDBLite consensus disorder prediction 175 189 - -
Tpr2g5364 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 171 IPR036638 GO:0046983
Tpr2g5364 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Tpr2g5364 342 SMART finulus 110 161 IPR011598 GO:0046983
Tpr2g5364 342 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983
Tpr2g5364 342 MobiDBLite consensus disorder prediction 175 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5364 Tpr-Chr2 60415779 60418612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5364 9 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.289 6.15e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g5364 HLH 8.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5364 K20558 - gmx:100777437 423.32