Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5342 ATGTCCCGCTTTCACGCGCATCACAGACAGCTGTTTAAATTCGCATCACAGCTGTCTGTTACCATTCATCATTTTCTGACCGTTGGGGAGAATGAAACCCTAATTCTTCTTATAAATACATACAAAGGCTTTTGCGCCGTTTTAATTTCATTCCTTAACTCTCACAATACTCACTTTCACAAAAATCGCTGTTCATCGCTGTTCATCTGCTTCGTTAGTTTCACTGAAGTTCATCGCTGTGTTCATCGCTCTCACCGAAGTTCCTTCCTTGGTTCATCGCTCTCTGACCCATTGCTTTCATTTCATTCAAGACTCAATCAATTTGTCGATCATGACACCTACGATTTCTACACTATTCACCACATTTGCAATCAATTACACTATCAAGTTACATCATGTTTTACAATTTCTCAAGCAAAGCAGCTCTTGTCGACATCACATTTCGACATCATACTCGTCGAAACTCATATTCCACAGCAAGATACTTATGCATTTGTTCAACAAGTGACTTCACATTTGAAAATTCCAGTGATTATGATGTCGCTTGATAACCGAACCTGTTCTGTTATGGATTCCATTTCCAACGGGGCTTGTAGTTACTGGGCCAAACCACTGGATGAAAATCTATTCAAAAATATGTGGCAACATGTCGTGCGGCAACATCTAGTGCAAAAGGAAAGCGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGAACATCTAGTGCAAAAGGAAAGCGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGATGATGAGGTTCATGTTTCTAAACAACCTCCGGCAAAGAAAGCTCGTTTCTCTTGGACAGATGATTTGCACCAAAAATTTGTGTCGGTCGTGAATCATCTTGGGATTAAAAATGCAAAGCCTAAAAAAGTTCTGAAGATCATGGATTGTCCTGGCTTGGAATTACAGCATGTAGCTAGTCATTTGCAGAAATATAAAATGTATTTAGATGGTGGGATAAAAAATTCAAAGATGAATCAGAAGAACAATGAAACACAAGCACAGGATCAAGAAATTGATGAAACCGAAGTATTTTTTAGCTTGACTGATTTTTTCCCCGATCTTAACGATGATGATATACACAATAACAACTATGCTGTTTCAGCTGAGAGCATTGATTCCCCTAGCACCTCTCTTCCACAGCTTGGGCAATATTCAATGACACCACCTGATCAATGTGACGATTCCGACATATTTTCTAATTTGACCGATTTATTCCCCAATCTTAACGATGAGATACACAATGGGATGTGGTGA 1281 0.395 MSRFHAHHRQLFKFASQLSVTIHHFLTVGENETLILLINTYKGFCAVLISFLNSHNTHFHKNRCSSLFICFVSFTEVHRCVHRSHRSSFLGSSLSDPLLSFHSRLNQFVDHDTYDFYTIHHICNQLHYQVTSCFTISQAKQLLSTSHFDIILVETHIPQQDTYAFVQQVTSHLKIPVIMMSLDNRTCSVMDSISNGACSYWAKPLDENLFKNMWQHVVRQHLVQKESEAKGLKKRGREHLVQKESEAKGLKKRGRDDEVHVSKQPPAKKARFSWTDDLHQKFVSVVNHLGIKNAKPKKVLKIMDCPGLELQHVASHLQKYKMYLDGGIKNSKMNQKNNETQAQDQEIDETEVFFSLTDFFPDLNDDDIHNNNYAVSAESIDSPSTSLPQLGQYSMTPPDQCDDSDIFSNLTDLFPNLNDEIHNGMW* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5342 426 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 269 321 IPR006447 GO:0003677
Tpr2g5342 426 ProSiteProfiles Response regulatory domain profile. 105 218 IPR001789 GO:0000160
Tpr2g5342 426 PANTHER TWO-COMPONENT RESPONSE REGULATOR 109 350 IPR045279 GO:0009736
Tpr2g5342 426 Gene3D - 266 326 - -
Tpr2g5342 426 MobiDBLite consensus disorder prediction 243 265 - -
Tpr2g5342 426 Gene3D - 107 227 - -
Tpr2g5342 426 SUPERFAMILY CheY-like 109 228 IPR011006 -
Tpr2g5342 426 Pfam Response regulator receiver domain 118 210 IPR001789 GO:0000160
Tpr2g5342 426 SUPERFAMILY Homeodomain-like 267 324 IPR009057 -
Tpr2g5342 426 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 109 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5342 Tpr-Chr2 60177697 60180488 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5342 157 324 Response Regulator Gene Family AT2G01760 38.947 9.13e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr2g5342 Response_reg 2.9e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5342 - K14491 mtr:MTR_4g021760 204.142