Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5340 ATGAACTTTCCCAATTCCATACTCATCTTAACTTATTTCCTTTTCTTCTTCAACATTCATCAAAAGCATATAGTGGCACTAGCAACCATAGAGACATGTTTAGACACTTTTTGCCACACTAATCAACCACTAATCCGATTTCCATTCCATATAGAAGGAAAACAAGCAAAGACATGTGGATATCAAGGATTCAAAGTATCATGCAATGAAAATGAAAAAACTCAAACACTTCTCAATCTACCTTATATGAAAAAACTCAAAATCCAAAAAATAAACTATGCCAAACAAGAACTTTTGGTGAATGATCCCAATAATTGTCTCCCAAAACAACTTCTATCACTTAACCTCTCTTCTTCTCCATTTGATGCTGTTTACTATCAACAATTTACCTTTTTTAACTGCTCCTTTAACTTGGAATACCTTACCTCTAAGTACAAACCAATAGCTTGTCTTAGTGATTTTCCGAAATATGTTGTTTTCGCAACGCCTTCTCTTAGTGTGTTTGTGCACTTATCGTCTATTTGCGATTTGGTTGACACCGTGAACGTGCCAGTTAAATCGCCGTTTTTTGATCAAGTGTTGTCGTCTGAACTTGACGATGACCTTCGATTGTCATGGAATTCGCCGGCGTGTGGTAGGTGTGAGTCTCATGGTGGACGATGTGGCTTTCAAGTTAACTCTACTTTTGAAATTGATTGTTACAATGTCCCTCCACGACAAGGGATTTCCCGTGGTGCAAGTTACGCCATAGCTATATGTGTAGGGGTGCCATCTTTGTTGTGCTTTATTTCACTGTTAAGTTGGATATGCAGCAAGTTTAGATTTGGGACTCATGGTTGGGCTTGGGCTCACGACACGGTGGCCGATTTTGAGGCTCTTCTTGATCCACAACAATACACAAACATTTCAGGTCTTGATAAATCTACGATTGAATCTTACCGGAAAATAGTTATAGGTGATATCATACACTTACCTAAATCTAATGGCAAGACATGCCCTATATGTTTGTCAGATTATATGCCTAAAGAAACAGTGAAAACTATGCCCGAATGTGAACATTGCTTTCATGCACAATGCATCGATGAATGGCTTCTGCTGAATGCATCATGTCCAATTTGTCGAACTTCTCCTACATGTGTACCATCACAAAATCTAGCTCAATCTTGA 1167 0.3839 MNFPNSILILTYFLFFFNIHQKHIVALATIETCLDTFCHTNQPLIRFPFHIEGKQAKTCGYQGFKVSCNENEKTQTLLNLPYMKKLKIQKINYAKQELLVNDPNNCLPKQLLSLNLSSSPFDAVYYQQFTFFNCSFNLEYLTSKYKPIACLSDFPKYVVFATPSLSVFVHLSSICDLVDTVNVPVKSPFFDQVLSSELDDDLRLSWNSPACGRCESHGGRCGFQVNSTFEIDCYNVPPRQGISRGASYAIAICVGVPSLLCFISLLSWICSKFRFGTHGWAWAHDTVADFEALLDPQQYTNISGLDKSTIESYRKIVIGDIIHLPKSNGKTCPICLSDYMPKETVKTMPECEHCFHAQCIDEWLLLNASCPICRTSPTCVPSQNLAQS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5340 388 Pfam Wall-associated receptor kinase galacturonan-binding 33 102 IPR025287 GO:0030247
Tpr2g5340 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 379 IPR013083 -
Tpr2g5340 388 ProSiteProfiles Zinc finger RING-type profile. 332 374 IPR001841 -
Tpr2g5340 388 Pfam Wall-associated receptor kinase C-terminal 181 234 IPR032872 -
Tpr2g5340 388 SUPERFAMILY RING/U-box 315 378 - -
Tpr2g5340 388 CDD RING-H2_EL5_like 331 374 - -
Tpr2g5340 388 SMART ring_2 332 373 IPR001841 -
Tpr2g5340 388 Pfam Ring finger domain 331 374 IPR001841 -
Tpr2g5340 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 383 - -
Tpr2g5340 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5340 Tpr-Chr2 60153426 60156643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5340 31 378 C3H Transcription Factor Family AT2G46495 34.375 7.20e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5340 - - gmx:100818969 497.664