Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5337 ATGTCGTCGACTTTGCTGGAAGTGACTCGGTCGGGGCACGAGGAGGTGGAGCGGTTTGAGAGATTGATAGCGAAGGATCTTCAGAATGATCCCACATCCAACAAGGACCGTTTGTTTCGGAGTCACCGTGTTAGAAATATGATCGACACCATCACCTCGACCACTGAAAGGCTGATTGAGATCTATGACGACAAAGACAATGCAAGGAAGGACGAGATTGCTGCACTGGGAGGACAAACTGCTACTGGAATTAATGTTTTCAGTGCCTTCTATGATAGACTCAAAGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGTGTTGTTGATGCCAATGATGATCTTGAAGCCCTTCTTAAAGAGGAACCTCAAATTGAGTTCAGCGGAGAGGAAGCTTTTGGTCGATATTTAGACATGCATGAATTATATCAACAGTATGTCAATTCTAAGTTTGGAGAGCCAATTGAGTATTCTGCATACCTTGATATCTTTTCTGAAACAGATAAGATTCCACGCAAAATGAAAACGACCAGGCAGTACAGGGAATACTTGGAGAATCTTTTGGAGTATATGATATATTTTTTCCAGCGGACAGAACCCCTGAAAGATCTTGATCGAATCTTTTCAAAGGTAACAACCGAGTTTGAAGAAAATTGGGCTACTGGAAAGGTACTGGGATGGGAGAATGTCAATCAGGAGAATGGACATGTACCTACTGAGCACACTTCAATTGATCTTGATTATTACAGTACAGTTGAAGAGCTTATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCGCTGGCTGCATTGGGACTTAAGACTGGCGGCACTATTCAGCAACGTGCAGAAAGGCTCTTCCTCACAAAGCATACTCCTCTTGATAAGTTGGACAAGAAGCATTTTGCCAAAGGGGCACGTGGTTTAGAAAAAAACGGGGTGGCTTCTGCTCCACAAGAAGGAAATTTAAAAGAAATTGCATTAATGGAGGCCAAACTGAATAAACTGTGTGATTTGTTAGATGAGACAATTCTTCGAACAAAAGACAATGTTGTAAAGAAGCAAGCCCTAACATATGAAGAAATTGAAGCAGAACGCCTGGAGGAAGAGACACAGGAGGACTCTGAAAGTGAAGATGATGAGCAGCAGATTTATAATCCCTTAAAATTACCAATGGGATGGGATGGGAAGCCCATACCTTACTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTCGCGCTTTTGAACGACATTTTAAAGAATGGCGTCACCAACATGGGATGCGGTGCCTTGGTATACCAAATACAAAGAACTTCAATGAAATCACATCAATTGAGGAAGCAAAGGAGCTCTGGAAGAAGATACAGCAGAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTACGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACACTGATTTACAGCGCCAGGGACTGATATGA 1527 0.4296 MSSTLLEVTRSGHEEVERFERLIAKDLQNDPTSNKDRLFRSHRVRNMIDTITSTTERLIEIYDDKDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDLEALLKEEPQIEFSGEEAFGRYLDMHELYQQYVNSKFGEPIEYSAYLDIFSETDKIPRKMKTTRQYREYLENLLEYMIYFFQRTEPLKDLDRIFSKVTTEFEENWATGKVLGWENVNQENGHVPTEHTSIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLDKLDKKHFAKGARGLEKNGVASAPQEGNLKEIALMEAKLNKLCDLLDETILRTKDNVVKKQALTYEEIEAERLEEETQEDSESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5337 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
Tpr2g5337 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
Tpr2g5337 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Tpr2g5337 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Tpr2g5337 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Tpr2g5337 508 Pfam Replication stress response SDE2 C-terminal 224 304 - -
Tpr2g5337 508 Pfam Splicing factor SF3a60 binding domain 81 105 IPR021966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5337 Tpr-Chr2 60132597 60139448 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5337 1 508 C2H2 Transcription Factor Family AT5G06160 73.870 0.0 749