Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5333 ATGAACCTTTTCACTACTAACAATCCATCATTCCCCGCTGGGCTTAGAGTACTTGCAGTCGATCATGACACCTACGATTTCTACACTATTCACCACATTTGCAATCAATTACACTATCAAGTTACATCATGTTCTACCATTTCTCAAGCAAAGCAGCTCTTGTCGACATCACATTTCGACATCATACTCGTCGAAACTCATATTCCACAGCAAGATACTTATGCATTTGTTCAACAAGTGACTTCACATTTGAAAATTCCGGTGATTATGATGTCGCTTGATAACCGAACCTGTTCTGTTATGGATTCCATTTCCAACGGGGCTTGTAGTTACTGGGCCAAACCACTGGATGAAAATCTATTCAAAAATATGTGGCAACATGTCGTGCGGCAACATCTAGTGCAAAAGGAAAGCGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGAACATCTAGTGCAAAAGGAAAGCGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGATGATGCGGTTCATGTTTCTAAACAACCTCCAGCAAAGAAAGCTCGTTTCTCTTGGACAGATGATTTGCACCAAAAATTTGTGTCGACCGTGAATCATCTTGGGATTAAAAATGCAAAGCCTAAAAAAGTTCTGAAGATCATGGATTGTCCTGGCTTGGAATTACAGCATGTAGCTAGTCATTTGCAGAAATATAAAATGTATTTAGATGGTGGGATAAAAAATTCAAAGATGAATCAGAAGAACAATGAAACACAAGCACAGGATCAAGAAATTGATGAAACCGAAGTATTTTTTAGCTTGACTGATTTTTTCCCCGATCTTAACGATGATGATATACACAATAACAACTATGCTGTTTCAGCTGAGAGCATTGATTCCCCTAGCACCTCTCTTCCACAGCTTGGGCAATATTCAATGACACCACCTGATCAATGTGACGATTCCGACATATTTTCTAATTTGACCGATTTATTCCCCAATCTTAACGATGAGATACACAATGGGATGTGGTGA 1014 0.3955 MNLFTTNNPSFPAGLRVLAVDHDTYDFYTIHHICNQLHYQVTSCSTISQAKQLLSTSHFDIILVETHIPQQDTYAFVQQVTSHLKIPVIMMSLDNRTCSVMDSISNGACSYWAKPLDENLFKNMWQHVVRQHLVQKESEAKGLKKRGREHLVQKESEAKGLKKRGRDDAVHVSKQPPAKKARFSWTDDLHQKFVSTVNHLGIKNAKPKKVLKIMDCPGLELQHVASHLQKYKMYLDGGIKNSKMNQKNNETQAQDQEIDETEVFFSLTDFFPDLNDDDIHNNNYAVSAESIDSPSTSLPQLGQYSMTPPDQCDDSDIFSNLTDLFPNLNDEIHNGMW* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5333 337 SUPERFAMILY Homeodomain-like 178 235 IPR009057 -
Tpr2g5333 337 ProSiteProfiles Response regulatory domain profile. 16 129 IPR001789 GO:0000160
Tpr2g5333 337 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 180 232 IPR006447 GO:0003677
Tpr2g5333 337 Pfam Response regulator receiver domain 17 121 IPR001789 GO:0000160
Tpr2g5333 337 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 287 IPR045279 GO:0009736
Tpr2g5333 337 MobiDBLite consensus disorder prediction 139 177 - -
Tpr2g5333 337 Gene3D - 12 138 - -
Tpr2g5333 337 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 11 287 - -
Tpr2g5333 337 Gene3D - 177 237 - -
Tpr2g5333 337 SUPERFAMILY CheY-like 14 139 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5333 Tpr-Chr2 60093763 60095706 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5333 11 250 Response Regulator Gene Family AT2G25180 33.333 9.21e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr2g5333 Response_reg 7.4e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5333 - K14491 mtr:MTR_4g021760 225.713