Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5332 ATGATTATCAAGCGGAACTTGAAATCTCAAATGCCGAGTTTGAAACGGTGTAAACTCGCTGACTCAGTTGAAGAAGATAACGACTGTTCTAATATTGCTCCTAAGAAGAGAAAAACCAGCGGTTATTATTATCCTCTGGACCTTTTAGGTGATGTTGCCGCTGCTTTAATTCCGGTGAGTTTTCACGGTCTACATAGTACCGGTGTATCGGAGAAGGGATTGTCTGCATCATGGTGCACGCAAGTTCCGTGCTCCCCCGGTGAAGTTGAATCGAATTCGAAAGAAGCAATGGTTCCGGTGAATAAAAAACAGGTTAAGCGAAAGCAACCGCCACTTGTTAGAACTTCGAGAGGGCGAGTTCAGGTTCTTCCTTCGCGGTTTAATGATTCTGTTCTTGATAATTGGAAGAAAGATGGTAAGATTAGCTTGCGTAATTGTGAAGTTGTAGATGAATTTGAATGCAAAAAAGACAGGGTAGTACCGAAAATTTGCATCAACAATGTTAAAAAAGGGCGAAAGGATGAGAAAATCCGTTCTAAGTTCCGTAAGTATTCGGCATTGTATGATGATGATGATGTTGGTGTGAGTGTGAGGAATAGGAGTTTTGGTAGAAGGAAAGATTCAGCTTTGGATGGAAATGAAGTTGATTGGATGATGGATTGTGATGATAAAGTTGATTTCAAGGAGAATAATGGAGATAGGAAAGATGGGTTGTATGGACCAGAAGATTTTTATGCAGGTGATATGGTGTGGGCCAAAGCTGGAAGAAAGGAACCTTTTTGGCCGGCTGTTGTTATTGATCCTATGAAACAAGCACCTGAGCTGGTTCTTAGGTCTTTAATAGCTGATACTGCTTGTGTCATGTTTCTCGGCAATGTGGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCATGATCTTTCCATTTCTGGATTATGTAGACAGGTTTCAAGAGCAGCCTGAATTGAGTAACTATAGTCCCTCTGATTTCCAAATGGCAATAGAGGAAGCGTTTTTGGCAGACCAAGGGTTTAAAGAGAAGTTGATAGATGATATAAATGCAGCAGCTGATGCCACTGGTTATGATGATACTGTTCTGAAATCTTTCAAGGAGGTCCGTGGTTCAAACCAGTATGCAGGAACAGGAAAGCATTTTCTTAATCAGGATTCATTTGATAAGAAAAACGCGAGATCATGTCAAGCTTGTGGATTGGATCTTCCTTACGAGATGCCAAAGAAAACTAAGGGTTTGACAGCTAATGGTCAATTACTATGTAAAACATGTGCAAGGTTAACGAAATTGAAGCATTATTGTGGCATCTGCAACAAAGTTTGGAATCATTCCGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCACGCCGAATGTGACCAAATTTCTAGAAACCATTTCAAGGATCTGGAAAGCACCGATTATTTCTGCCCTACGTGCAGAGGCAAGTTTGACTTTGAGTTATCTGATTCAGAAAAAACGACAAAGACAAAAGTCAAATCGAACAGAAACGGTGGGCAGCTAGTGCTTTCAAATAAGGTCAATGTTTTATGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGCCAGAAAAGCAAGCACTTAGCGAATGGGAACGACACACAGGTTCCAAATTAAGAGATTGGAAGACAAGTATTATCGTGAAAGACTCTAGGCTACCTCTGGAACAATGGATGCTGCAGGTTGCAGAATCTCATGCTAATTCTCTAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAGGAAAGGAAGCACAAGTTGCTTACCTTCTTGAAAGAGAGGTATGAACCTGTCTATGCTAAGTGGACTACGGAGCGTTGTGCTATTTGTAGATGGGTCGAAGACTGGGACTACAATAAAATTATCATTTGCAACAGATGCCAAATAGCTGTTCACCAAGAATGCTATGGTGCAAAAAATGTTAAAGACTTTACATCTTGGGTCTGTAAGGCCTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCCGTAAAAGGTGGTGCTCTAAAGCCAACCGATATTCACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGAAGATGGAACCTGCTTTGGGTATACTTAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAGTCCATGGTTCCTGCACACAGTGTTTCAGATGTTCCACTTATTTCCATGCTATGTGCGCATCAAGGGCCGGTTACCGAATGGAGTTGCATTGCTTGAAGAAAAATGGAAAGCAGACAACAAAAATGGTTTCCTACTGTGCTTACCACAGAGCTCCAAATCCCAACAATGTTTTGATTTTGCAAACCCCTCTCGGGGTAATTTCAACCAAAAGCCTTCTCCAAAAGAGAAAATCTGGATCAAGATTAATCTCATCTACCAGAACAAAGAAACAAGACACTCCTATTGATATCCCTGAGCATGACCCGTTCTCTGCAGCTAGGTGTCGTATCTTTAAAAGAACAAATCATATGAAAAAGAGAGCCGCAGAGGAAGCCGTTTATCATAAAGCGAGGGGTCACTGCCACCATCCTTTAGATGCAATACAGAGTTTGAATACATACAGAGCAGTAGTAGAGGAGCCTCAAGCTTTCTCTTCTTTCAGAGAACGCCTTTACCATTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTTTTTGCACGTAGGAATATGCAAGAAGGAGAAATGGTTCTTGAATATCGTGGCGAACAAGTAAGACGCAGTGTTGCTGATCTGAGGGAGGCGTGCTACAGAGCAGAAGGAAAAGATTGCTACCTGTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACCGATAAAGGGAATATAGCACGGCTAATAAATCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGCGATGATGAGAGCCGGATTGTACTCATCGCTAAGACTAATGTAGTTGCTGGTGACGAGCTAACCTACGACTACTTATTCGATCCTGATGAGCCAGAAGAATTTAAAGTCCCTTGCATGTGTAAAGCACCGAATTGCAGGAAATTCATGAATTAG 3204 0.4179 MIIKRNLKSQMPSLKRCKLADSVEEDNDCSNIAPKKRKTSGYYYPLDLLGDVAAALIPVSFHGLHSTGVSEKGLSASWCTQVPCSPGEVESNSKEAMVPVNKKQVKRKQPPLVRTSRGRVQVLPSRFNDSVLDNWKKDGKISLRNCEVVDEFECKKDRVVPKICINNVKKGRKDEKIRSKFRKYSALYDDDDVGVSVRNRSFGRRKDSALDGNEVDWMMDCDDKVDFKENNGDRKDGLYGPEDFYAGDMVWAKAGRKEPFWPAVVIDPMKQAPELVLRSLIADTACVMFLGNVGNENQRDYAWVKHGMIFPFLDYVDRFQEQPELSNYSPSDFQMAIEEAFLADQGFKEKLIDDINAAADATGYDDTVLKSFKEVRGSNQYAGTGKHFLNQDSFDKKNARSCQACGLDLPYEMPKKTKGLTANGQLLCKTCARLTKLKHYCGICNKVWNHSDSGSWVRCDGCKVWVHAECDQISRNHFKDLESTDYFCPTCRGKFDFELSDSEKTTKTKVKSNRNGGQLVLSNKVNVLCNGVEGIYFPSLHLVVCKCGFCGPEKQALSEWERHTGSKLRDWKTSIIVKDSRLPLEQWMLQVAESHANSLVSVKPKKPSLKERKHKLLTFLKERYEPVYAKWTTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGAKNVKDFTSWVCKACETPDIKRECCLCPVKGGALKPTDIHTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQVHGSCTQCFRCSTYFHAMCASRAGYRMELHCLKKNGKQTTKMVSYCAYHRAPNPNNVLILQTPLGVISTKSLLQKRKSGSRLISSTRTKKQDTPIDIPEHDPFSAARCRIFKRTNHMKKRAAEEAVYHKARGHCHHPLDAIQSLNTYRAVVEEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNMQEGEMVLEYRGEQVRRSVADLREACYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVVAGDELTYDYLFDPDEPEEFKVPCMCKAPNCRKFMN* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5332 1067 Gene3D - 241 350 - -
Tpr2g5332 1067 CDD ePHD_ATX3_4_5_like 690 801 IPR041955 -
Tpr2g5332 1067 Pfam PWWP domain 247 340 IPR000313 -
Tpr2g5332 1067 ProSiteProfiles Extended PHD (ePHD) domain profile. 687 802 IPR034732 -
Tpr2g5332 1067 ProSiteProfiles Zinc finger PHD-type profile. 438 494 IPR019787 -
Tpr2g5332 1067 CDD PHD_TCF19_like 441 491 - -
Tpr2g5332 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 495 IPR013083 -
Tpr2g5332 1067 CDD SET_SETD1-like 912 1063 - -
Tpr2g5332 1067 SUPERFAMILY FYVE/PHD zinc finger 634 698 IPR011011 -
Tpr2g5332 1067 Pfam PHD-zinc-finger like domain 689 801 - -
Tpr2g5332 1067 SMART PHD_3 746 802 IPR001965 -
Tpr2g5332 1067 SMART PHD_3 635 682 IPR001965 -
Tpr2g5332 1067 SMART PHD_3 440 492 IPR001965 -
Tpr2g5332 1067 SUPERFAMILY FYVE/PHD zinc finger 440 495 IPR011011 -
Tpr2g5332 1067 Pfam PHD-finger 648 682 - -
Tpr2g5332 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 684 IPR013083 -
Tpr2g5332 1067 ProSiteProfiles Post-SET domain profile. 1051 1067 IPR003616 -
Tpr2g5332 1067 PANTHER PHD FINGER PROTEINS 1 1067 - -
Tpr2g5332 1067 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1067 IPR025780 -
Tpr2g5332 1067 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1067 - -
Tpr2g5332 1067 ProSiteProfiles SET domain profile. 925 1042 IPR001214 GO:0005515
Tpr2g5332 1067 Gene3D SET domain 839 1067 IPR046341 -
Tpr2g5332 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 804 IPR013083 -
Tpr2g5332 1067 SMART set_7 925 1048 IPR001214 GO:0005515
Tpr2g5332 1067 SUPERFAMILY SET domain 915 1067 IPR046341 -
Tpr2g5332 1067 CDD PHD_ATX3_4_5_like 635 681 IPR042011 -
Tpr2g5332 1067 Pfam PHD-finger 440 492 IPR019787 -
Tpr2g5332 1067 SUPERFAMILY Tudor/PWWP/MBT 239 345 - -
Tpr2g5332 1067 ProSitePatterns Zinc finger PHD-type signature. 636 681 IPR019786 -
Tpr2g5332 1067 ProSiteProfiles PWWP domain profile. 246 315 IPR000313 -
Tpr2g5332 1067 Pfam SET domain 936 1041 IPR001214 GO:0005515
Tpr2g5332 1067 ProSiteProfiles Zinc finger PHD-type profile. 633 684 IPR019787 -
Tpr2g5332 1067 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5332 Tpr-Chr2 60072831 60081245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5332 636 801 C2H2 Transcription Factor Family AT3G14740 33.526 1.73e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr2g5332 zf-HC5HC2H_2 3.7e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5332 - - aprc:113853254 1723.75