Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5330 ATGTATAGAGAAAATGGTCTTCTTTTTCCATGGTCATATCTACACAATTTCTCACAAGAGCTTCATCAACTTGAAGAGTATTGCCAAACCCAGAAGTTCAATGCATCAATGGGTGACCTTTTTCAGTTTTCTGCAATGTCCGAGTATGATTTTGCAGCTGAAGGAGATCTGTTCAAAGCACCTGAACTGATTGTCGAAGAGTCAGGCATTGAGATGGATCCTATGACATCGGCGATCTCAATGATATCTTGTGGCGAGGATGTAAAATCTGCAGATATTTCTATTCTTCAAAACGAACAACTTCTCAGCGATGTATTCTATGATTGCAAAAAGGATCTATTCGAAAAGACCGCAATGGAGTCACCACTGTCTGAGATTCTTGAAATCAAGGTTCCACTATTGAGCATTGATGAGAACACAATTCAAGAAAACAAACAACTTCCTGACATGACATTATCGAAGAGTGTCAGCTCAGGATGTTTAAGCTCAATGTACTGGATGCATGGATCTGCTGCAATCAAGCCTGCTTTCCTCGGTGTCTCGGAAATAGATTTTGATGCAGTTTATGGCATGAGGAGATCATTTAGTGAAGGAGATATAAAGACTCTTGGCAACGGTAATATGAACACTGTCGAATCTCCCCGAGAGAGGCCCTTTTTTACTAGCAGCGAGGAGCGCCTACAAAAGCTCTCGAGATACAGGAACAAGAAGGCAAAGAGGAATTTTGGGAGGAAAATCAAGTATGCTTGCAGGAAGGCTCTAGCTGATAGTCAACCAAGAATCCGCGGAAGATTTGCAAAGAATGAAGAATCTGAGGCAAATAGGGAATGA 831 0.414 MYRENGLLFPWSYLHNFSQELHQLEEYCQTQKFNASMGDLFQFSAMSEYDFAAEGDLFKAPELIVEESGIEMDPMTSAISMISCGEDVKSADISILQNEQLLSDVFYDCKKDLFEKTAMESPLSEILEIKVPLLSIDENTIQENKQLPDMTLSKSVSSGCLSSMYWMHGSAAIKPAFLGVSEIDFDAVYGMRRSFSEGDIKTLGNGNMNTVESPRERPFFTSSEERLQKLSRYRNKKAKRNFGRKIKYACRKALADSQPRIRGRFAKNEESEANRE* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5330 276 PANTHER CCT MOTIF FAMILY PROTEIN 28 273 - -
Tpr2g5330 276 ProSiteProfiles CCT domain profile. 226 268 IPR010402 GO:0005515
Tpr2g5330 276 Pfam CCT motif 226 268 IPR010402 GO:0005515
Tpr2g5330 276 Coils Coil 263 276 - -
Tpr2g5330 276 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 28 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5330 Tpr-Chr2 60050048 60053922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5330 222 272 C2C2-CO-like Transcription Factor Family AT5G57660 52.941 3.39e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr2g5330 CCT 7.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5330 - - gmx:100814332 396.741