Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5329 ATGGAGTATGGAAGGTTAGGACTATCCGAACCTGGAGGCTCGTCTCCCTCCCCCTCCGAACCTATAATCATTTCCAGACCTAGATCTTCCAAGAAGAAAATCGTTTTTCTTTCACTACTTGCTGTGTTACTGATCGTTGTCTCCGCCGTCTCCGCCGCAATGCTCACCGGAATCCATTACCGAACATCCTCACCAAAAAATCCAACTCTAAAGCATAATCCAACACAAGCAATTTCAAAAACATGTAGCAAAACTCGTTTTCCATCACTCTGTGAAAACTATCTTCTCGATTTTCTTGGATCGGATATTGCATCGGAAAAAGACCTGATCCACATTTCACTCAACATGACACTACAACACATTTCAAAAGCACTTTATTCCTCCGCCGCTATCTCCTCCACCGTCGGCATGAATCCTCGCATCCGCGCCGCTTATATAGATTGTCTTGAACTTCTAGACGATTCCGTCGACGCTCTTTCTCGTTCACTTACTTCCGTCGTACCTTCAACTTCCTCCGGAGCAGTTAAGCCTCTTACAGCTTCCTCAACAGACGACGTTCTCACGTGGCTTAGCGCCGCGCTAACTAATCAAGACACGTGTGCTGACGGTTTTTCCGACGTTTCCGGAGCGGTGAAAGATCAGATGGCGAGTAATATAAAGGATTTATCAGAGCTTGTGAGTAATTGTTTAGCTATTTTCTCTGCTTCCGGTGCCGGAGATGATTTCTCCGGTGTTCCGATAGGGAATAGAAGACGGTTAATGACAATGCCGGATGAAGATGAGTTTCCGGTGTGGTTGAAAAAGCGTGAGAGGAGGTTGTTGAGTTTACCGGTGACGGCGATACAAGCGGATGTGGTTGTTTCTAAAGACGGTAACGGAACGGTGAAAACTATAGAGGAGGCTCTTAAGAAGATACCTGAATATGGTAACCGACGCTTCATTATCTATATTAGACAAGGAAGGTACGAAGAGGACAATTTAAAGATAGGAAGGAAGAAAACTAATGTCATGATCATAGGAGACGGAAAGGGAAAGACAGTGATCACAGGTGGCAAAAATGTTTTGCAAAACTTGACCACATTTCACACAGCTTCCTTTGCTGCTAGTGGTCCAGGTTTCATTGCAAGAGATGTAACATTTGAGAACTATGCCGGTCCGGCGAAACACCAAGCGGTCGCTCTCCGTGTCGGATCAGACCATGCAGTTGTGTACCGTTGCAACATCATAGGATACCAAGACACAATGTATGCACACTCAAACCGTCAATTCTACCGCGAATGTGACATATATGGTACCGTAGACTTCATATTTGGCAATGCTGCGGTGGTTTTTCAAAATTGTAGCCTCTATGCACGAAAGCCCATGCCCCAACAAAAAAACACCATCACGGCTCAAAACCGAAAAGACCCAAATCAAAACACAGGTATATCCATTCACAACTGTCGGATCCTTGCCACATCAGATCTACAAGCATCCAAGGGTAGCTATCAAACCTATCTGGGCCGTCCGTGGAAATTATACTCTAGAACGGTATACATGCTATCATACATGGGAGATCATTTGCATCCACGTGGATGGCTAGAGTGGAATACAACTTTTGCTCTAGACACTTTGTATTATGGTGAGTACATGAATTATGGGCCAGGTGGAGCTATTGGACAAAGAGTCCACTGGCCCGGATATCGGGTTATTACATCCACCGTGGAAGCGAATAGATTCACAGTGGCTCAATTCATATCAGGATCGACTTGGATACCGTCTACCGGGGTTGCATTCGTAGCTGGCTTATCCACCTGA 1797 0.4535 MEYGRLGLSEPGGSSPSPSEPIIISRPRSSKKKIVFLSLLAVLLIVVSAVSAAMLTGIHYRTSSPKNPTLKHNPTQAISKTCSKTRFPSLCENYLLDFLGSDIASEKDLIHISLNMTLQHISKALYSSAAISSTVGMNPRIRAAYIDCLELLDDSVDALSRSLTSVVPSTSSGAVKPLTASSTDDVLTWLSAALTNQDTCADGFSDVSGAVKDQMASNIKDLSELVSNCLAIFSASGAGDDFSGVPIGNRRRLMTMPDEDEFPVWLKKRERRLLSLPVTAIQADVVVSKDGNGTVKTIEEALKKIPEYGNRRFIIYIRQGRYEEDNLKIGRKKTNVMIIGDGKGKTVITGGKNVLQNLTTFHTASFAASGPGFIARDVTFENYAGPAKHQAVALRVGSDHAVVYRCNIIGYQDTMYAHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMPQQKNTITAQNRKDPNQNTGISIHNCRILATSDLQASKGSYQTYLGRPWKLYSRTVYMLSYMGDHLHPRGWLEWNTTFALDTLYYGEYMNYGPGGAIGQRVHWPGYRVITSTVEANRFTVAQFISGSTWIPSTGVAFVAGLST* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5329 598 SUPERFAMILY Pectin lyase-like 279 595 IPR011050 -
Tpr2g5329 598 SMART PMEI_2 73 232 IPR006501 GO:0004857
Tpr2g5329 598 Pfam Plant invertase/pectin methylesterase inhibitor 77 232 IPR006501 GO:0004857
Tpr2g5329 598 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 235 IPR035513 -
Tpr2g5329 598 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 234 IPR035513 -
Tpr2g5329 598 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 233 IPR006501 GO:0004857
Tpr2g5329 598 MobiDBLite consensus disorder prediction 1 23 - -
Tpr2g5329 598 Pfam Pectinesterase 284 581 IPR000070 GO:0030599|GO:0042545
Tpr2g5329 598 Gene3D - 278 596 IPR012334 -
Tpr2g5329 598 PANTHER PECTINESTERASE 27 596 - -
Tpr2g5329 598 CDD PMEI-like_3 82 235 - -
Tpr2g5329 598 ProSitePatterns Pectinesterase signature 2. 429 438 IPR033131 -
Tpr2g5329 598 PANTHER PECTINESTERASE 27 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5329 Tpr-Chr2 60002118 60006476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5329 28 597 Carbohydrate Esterase AT3G49220 67.888 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5329 - - gmx:100808236 868.611