Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5318 ATGACAATAATATCTCCAGCTCAACCACCCATGCATCACCATCACTCTCAATCCCCATCTCCATTAATATCATCATCAGCAGCAGCAGCAGTAGACTTCAGTCCACCTCTAATAGCAATGGTCGTCGTCATCGCCGCCGCATTTGTCATCGTAACCTATTCCCGTCTCATAACTCGCCACTTATCCCCTCCCATCCACCGTTTAATCCAACGCTTCCATCGCCATCCACCTTCCTCCTCATTAGGCGACATCGAATCCCTCCAATACGATTCCACTACTTACGAAACTCCACTAACCTACGGCTTAGACGAATCCGTTATAAAAACAATTCCATTCTTCATCTACACAACTAAATACGAACAACAACAAGAATCTCTCCGTGATTGCGCCGTTTGTTTACTCGAATTCGAAGATCACGATTATGTTCGTACTCTTCCACTCTGTTCTCACACTTTTCATCTCGATTGTATTGATGCTTGGCTTCGTTCTCACGCTAACTGTCCTCTCTGTCGTTCTCTTCTTCTCTCTAATTCTCCTTTTAGACCTCTTATGGCTGCCAGAATTCCTCCTTCTTTTCATGATCAAACTAATGTTCTTCACATTGATACTCCTTTTCATAATTCTGTTTCTCCGCTTCCGGAGATTACTCCTCATTCTCCTGTTGATGAAAATCGCTTTACCGGACGCCAGGATTTTCTCTTGAAACGATCTTATTCGTTTGGATTTGAGAGGACTTTACCGTCGGAGAGGATGGTAATTGATCCTGCTACAACCTCGCCGTGGCGGTACCGGAGAGGTAGCACCACCGGTTTCTGGAATAAAAGACCGTCGCCGTTTGGCTCCCTTGGGAAGTCGAGAGTGTTTTCATTCAGATATTATAGAGGAATGAAATCACCGTTCTTCCGTCGGAGAGGTTTTTTTCCGTTTTCGGAGTCGAGTAATCGGTACGCCGCCGACGGAGGAAGTTCATGGCGGAGGAGTAAGTCGATAGCGAGTCCGATGTTTTTGAGATCTTCAGCAGCGGTATTTTCATCGAGTCGGTTAAGATGCGGTGATCCAGAGGCGTTACTTTCGCCGGAGAGATTTAACCGGCGACGATGA 1101 0.4605 MTIISPAQPPMHHHHSQSPSPLISSSAAAAVDFSPPLIAMVVVIAAAFVIVTYSRLITRHLSPPIHRLIQRFHRHPPSSSLGDIESLQYDSTTYETPLTYGLDESVIKTIPFFIYTTKYEQQQESLRDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRSHANCPLCRSLLLSNSPFRPLMAARIPPSFHDQTNVLHIDTPFHNSVSPLPEITPHSPVDENRFTGRQDFLLKRSYSFGFERTLPSERMVIDPATTSPWRYRRGSTTGFWNKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPFSESSNRYAADGGSSWRRSKSIASPMFLRSSAAVFSSSRLRCGDPEALLSPERFNRRR* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5318 366 SUPERFAMILY RING/U-box 114 182 - -
Tpr2g5318 366 CDD RING-H2_PA-TM-RING 128 171 - -
Tpr2g5318 366 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 341 - -
Tpr2g5318 366 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 341 IPR044675 -
Tpr2g5318 366 SMART ring_2 129 170 IPR001841 -
Tpr2g5318 366 Pfam Ring finger domain 128 171 IPR001841 -
Tpr2g5318 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 175 IPR013083 -
Tpr2g5318 366 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5318 Tpr-Chr2 59890979 59895298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5318 22 365 C3H Transcription Factor Family AT3G18930 50.258 8.49e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5318 - K19041 gmx:100806115 441.425