Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5294 ATGGACACAGCTCAGTGGGCACAGGGTAATATTGGATTGGTTAAACAAATGGATGGATCAACATCAAATTCAAAACCACCAGCATCTTTGATAGAAAGAAGAGCAAGACCACAAAAAGATCAAGCTATAAATTGTCCAAGGTGCAATTCAACAAACACAAAATTTTGTTACTACAACAATTATAGCCTCTCTCAACCAAGATACTTTTGCAAAACTTGTAGAAGATATTGGACTGAAGGTGGTTCTTTAAGAAATGTACCTGTAGGTGGTGGTTCAAGAAAAAACAAAAGATCAACATCATCATCATCATCATCACCTTCAATTTCACAATCACAACCTCATCAATCTCAACCTATTTCATCATCAATAACAAAAAATATTATAATTAATCCTGATCTGACTACTTCTACACATAATCATAATTTTCCACAATCTGCTTCTCAAAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACAAACAAATGAGGATAGTTATAATAATACTATATCTAAATTTATTGAACTTCCTTATAGTACTGAACAGGATAAAACTACAAGTGCTATGGAGCTTTTGAAAACTGCTTCTTCATCTAGGGGTTTGAATTCTTTTATGCCTATGACTTTGTCTGAAGGTAGTGCAATGTATAATTCAAGTGGTTTTGCTTTGCAAGATTTTAAGCTTGGTGTTAATTTTGGTTTAGAAGGGTTTGAGAATGGTTATGGTGGTTTACAAGGGATTAATCAAGAAGGTTCTGGTGGTGGTGTTGGCGGCGGCAGCGGTGCAAGGATGTTGTTTCCTGTTGTGGAAGATCATCAGTTGAATAATAATAAGCAGCAACAGCAGCAGCAAGTTCCAAATGGTGGTGGTGAATTTGATCATCAGCATCATCATCATCAGCAGCAGAACAATAGAAATCAAGGTGGTGATGCAAGTGGTTATTGGAATGGTATGTTAGGTGGTGGATCATGGTAG 990 0.3657 MDTAQWAQGNIGLVKQMDGSTSNSKPPASLIERRARPQKDQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTSSSSSSPSISQSQPHQSQPISSSITKNIIINPDLTTSTHNHNFPQSASQNPKIHQGQDLNLAYPPQTNEDSYNNTISKFIELPYSTEQDKTTSAMELLKTASSSRGLNSFMPMTLSEGSAMYNSSGFALQDFKLGVNFGLEGFENGYGGLQGINQEGSGGGVGGGSGARMLFPVVEDHQLNNNKQQQQQQVPNGGGEFDHQHHHHQQQNNRNQGGDASGYWNGMLGGGSW* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5294 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 25 325 - -
Tpr2g5294 329 MobiDBLite consensus disorder prediction 87 121 - -
Tpr2g5294 329 MobiDBLite consensus disorder prediction 282 316 - -
Tpr2g5294 329 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Tpr2g5294 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 325 IPR045174 GO:0003700|GO:0006355
Tpr2g5294 329 MobiDBLite consensus disorder prediction 16 39 - -
Tpr2g5294 329 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Tpr2g5294 329 MobiDBLite consensus disorder prediction 92 121 - -
Tpr2g5294 329 Pfam Dof domain, zinc finger 40 97 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5294 Tpr-Chr2 59659930 59661796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5294 28 329 C2C2-Dof Transcription Factor Family AT3G61850 37.383 2.44e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tpr2g5294 zf-Dof 2e-33 No_clan