Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5278 ATGCATTTTTTGGTTGTGTACGCGGTTAAGGCAGTGGTGGGTTACTATGTATTGACAACGGGGCTCCAATATCTTGACCCGAACCGTGAAACATCGAAGAAGGCTCATGAGCAGAAGAAAGATATTGCAAAGCGTCTAGGTCGTCCCCTCGTTCAAACCAATTCTTACGAGGATGTGATAGCATGTGATGTTATAAATCCTGACAACATTAATGTGGAATTTGACTCCATTGGGGGACTTGAAACTATTAAACAAGCTTTGTTTGAGCTTGTTATTTTACCCCTTAAGCGGCCCGACTTGTTTTCGCATGGTAAGCTCCTTGGACCACAAAAGGGGGTCTTGTTGTATGGACCTCCTGGCACTGGAAAAACTACACTTGCAAAAGCTATTGCCAAGGAGTCTGGAGCAGTATTCATTAATGTCAAGATATCCAACCTCATGAGCAAATGGTTCGGGGATGCCCAAAAGCTCGTGGCTGCCGTATTTAGCTTGGCTGATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTAAACGACGTACATCAGATGACGAGGCTATGTTAAGCATGAAAACGGAGTTCATGGCTCTATGGGACGGATTCACCACCAACAAGAATGCTCAGGTTATGGTGCTTGCAGCAACTAATCGTCCTGCAGAACTTGATGAAGCAATACTCAGGCGGTTTCCTCATGCTTTTGAAATTGGATATCCAAACCAAAGAGAGAGGGCTGAGATATTGAAGGTTATCTTAAAGGGGGAGAGGGTTAAAGATAAAATAGACTTCGGTTATATAGCTGGGTTATGTAAGGGTTACACTGGTTCAGATTTATTTGATCTTTGCAAGAAGGCTGCGTATTTTCCTATTAGAGAACTACTGGATGATGAGAAGAAAGGGAAACAAACCTGTGAACCTAGACCTTTGTCGCAATTAGATTTGAAGAAGGCCCTTTCAACTTCACGGAAGACAACTGTTGCTGCAAATGAATACAGTAGGATGAACCCCTGGATCCTTAAAATTTTGAGTTTCTTTTTTTGTTTGTTTTTGTTTTGTTTTTGGTTTACAAAATATTTATCTTAG 1098 0.4162 MHFLVVYAVKAVVGYYVLTTGLQYLDPNRETSKKAHEQKKDIAKRLGRPLVQTNSYEDVIACDVINPDNINVEFDSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTTLAKAIAKESGAVFINVKISNLMSKWFGDAQKLVAAVFSLADKLQPAIIFIDEVDSFLGKRRTSDDEAMLSMKTEFMALWDGFTTNKNAQVMVLAATNRPAELDEAILRRFPHAFEIGYPNQRERAEILKVILKGERVKDKIDFGYIAGLCKGYTGSDLFDLCKKAAYFPIRELLDDEKKGKQTCEPRPLSQLDLKKALSTSRKTTVAANEYSRMNPWILKILSFFFCLFLFCFWFTKYLS* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5278 365 Gene3D - 244 326 - -
Tpr2g5278 365 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 4 331 - -
Tpr2g5278 365 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 4 331 - -
Tpr2g5278 365 Gene3D - 71 336 IPR027417 -
Tpr2g5278 365 Pfam AAA+ lid domain 266 300 IPR041569 -
Tpr2g5278 365 Pfam ATPase family associated with various cellular activities (AAA) 113 242 IPR003959 GO:0005524|GO:0016887
Tpr2g5278 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 300 IPR027417 -
Tpr2g5278 365 CDD AAA 107 243 - -
Tpr2g5278 365 SMART AAA_5 109 245 IPR003593 -
Tpr2g5278 365 ProSitePatterns AAA-protein family signature. 215 234 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5278 Tpr-Chr2 59473090 59497474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5278 72 303 Calmodulin-binding Proteins AT3G56690 36.555 6.59e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5278 K22530 - gmx:100796908 557.37