Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5275 ATGGGAGGTTTATCAGATACGAAGGTACTACAGGATTTGTTGTTGTACGCGGCTAGGGCAGCGCTGAGTTACTGGGTATTGGTAACGGGGCTCCGATATCTTGACCCGAACCGTGAATCAACGAAGAAAGCTCTTGAGCAGAAGAAAGAGATTGCAAAGCGTCTAGGTCGTCCCCTTATTCAAACCAATTCTTATGAGGATGTGATAGCCTGTGATGTTATAAATCCTGACCACATTAATGTGGAATTTGACTCCATTGGGGGACTTGAAGCTGTTAAACAAGCTTTGTATGAGCTTGTTATTCTACCCCTAAAGCGGCCCGACTTGTTTTCGCATGGCAAGCTCCTTGGACCACAAAAGGGGGTTTTGTTGTATGGACCTCCTGGCACCGGAAAAACTATGCTTGCAAAAGCTATTGCCAAGGAGTCCGGAGCAGTATTCATTAATGTCAAGATATCCAACCTCATGAGCAAATGGTTCGGGGATGCCCAAAAGCTCGTGGCTGCCGTATTTAGTTTGGCCGACAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGTCGTACATCAGATCACGAGGCTATGTTAAACATGAAAACAGAGTTCATGGCTCTATGGGATGGATTCACCACCAACAAGAATGCTCAAGTTATGGTGCTTGCAGCAACTAATCGTCCTTCGGAACTTGATGAAGCAATACTCAGGCGGCTTCCTCAAGCTTTTGAAATTGGATATCCAGACCAGAGAGAGAGGGCTGAAATATTGAAGGTTATCTTAAAGGATGAGAGGGTTGAAGATAACATAGACTTCGGTTATATAGCTGGATTATGTAAGGGTTACACCGGTTCAGATCTATTTGATCTTTGCAAGAAGGCTGCGTATTTTCCTATTAGAGAACTACTGGATGATGAGAAGAAAGGGAAAGAATCTTGTGTACTGGATGATGAGAAGAAAGGGAAAGAATCTTGTGAACCTAGACCTTTGTCACAGTTAGATTTGGAGAAGGCCCTTTCCACTTCACGGAAGACAACAGTTGCGGCAAATGAATACAGTAGAATGAAAGCACAGTCATCTTCAAGACAGTCATTTTCTGGTGAGTCAGGTGATTACGAGGTTCAAGCTGCAATCAAGGAAATTTCTAGGCTTATGGGTTCTCACATGATTAACATCCAATTAGAACCCCAGGATCCTTAA 1215 0.4354 MGGLSDTKVLQDLLLYAARAALSYWVLVTGLRYLDPNRESTKKALEQKKEIAKRLGRPLIQTNSYEDVIACDVINPDHINVEFDSIGGLEAVKQALYELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVKISNLMSKWFGDAQKLVAAVFSLADKLQPAIIFIDEVDSFLGQRRTSDHEAMLNMKTEFMALWDGFTTNKNAQVMVLAATNRPSELDEAILRRLPQAFEIGYPDQRERAEILKVILKDERVEDNIDFGYIAGLCKGYTGSDLFDLCKKAAYFPIRELLDDEKKGKESCVLDDEKKGKESCEPRPLSQLDLEKALSTSRKTTVAANEYSRMKAQSSSRQSFSGESGDYEVQAAIKEISRLMGSHMINIQLEPQDP* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5275 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 309 IPR027417 -
Tpr2g5275 404 CDD AAA 87 252 - -
Tpr2g5275 404 SMART AAA_5 118 254 IPR003593 -
Tpr2g5275 404 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Tpr2g5275 404 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Tpr2g5275 404 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 5 364 - -
Tpr2g5275 404 Pfam AAA+ lid domain 274 309 IPR041569 -
Tpr2g5275 404 Gene3D - 253 345 - -
Tpr2g5275 404 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 5 364 - -
Tpr2g5275 404 Gene3D - 80 352 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5275 Tpr-Chr2 59401445 59406483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5275 81 312 Calmodulin-binding Proteins AT3G56690 35.294 8.66e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5275 K22530 - gmx:100796908 633.254