Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5261 ATGGGTCATGTTGGAATAACTAGTGGTGAGAAATTGGTGAGAGTTGAAGAAGAGGAGAAGATTAGGGAAGAAGAAGAAAGTGGAACTGAGAGTAGAGGTGGTGGTGAAATGAAAGGTCTTTTGAGGTGGGAGAAATTTTTGCCAAAAATGGTTTTAAGAGTGCTTTTGGTTGAAGCTGATGATTGTACAAGACAGATTATAACAGCACTTCTCAGAAAATGTAACTATAAAGTTGCTGCTGTTGCTGATGGCTTGAAGGCGTGGGAAATAATGAAGGGAAGACCGCGCAATTTCGATCTAATACTTACAGAAGTTGATTTGCCATCTATATCTGGCTATGCACTTCTCACATTAATTATGGAGCATGATATTTGCAAAAACATACCTGTCATAATGATGTCGTCTCAAGATTCAGTTAGCACAGTATACAAATGCATGTGTAGAGGTGCAGCTGACTATCTCGTTAAACCGATTCGAATAAATGAACTGAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCACAGGTAACCGCAAACGCTGGCATAAATGGTCACCCAGATGAAACCGATGAACAGCAGAAAGTTGAAGCCACTGCTGAAAACAACGCTGCTGGTTATCGTTCTAGTGGCGAAGCTGCTTGCATTCAAATAAATAAGGACTTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCAAACATGGAAGCTGAGAGTGGCCTGGTTGATAACATGCAGGAATTTTCTCAGCCGAAATGTGCTGAAGCATATCCAAGTGAAACAAAGACACAAGATGTTGACATTCATTTAGGCCAGGCATTGATCACGCAGGACAGTCGCGCTGGAGGATTATGTGTGGCTAACTGCAACAATGGAGAGTCGAACACAAATAATGGAAATGATGGTGAGGATCAAGAGCACTTTAGGATTGCTAGTACCAGTGGTGAGGTTCATGACAATCACTATGTTGAAATTAACTCTACTAAGGAAGCTATTGACTTGATTGGAGCATTTCGTACTCATCCGAATTGCAGTCTCAAAAGTTCATCAATTGATTGCACAGGAAAGTTTGACGATTTTCCACAACTGGATCTTTCTTTGAGAAGCTCTCATCCCAGCAGCTTTGAGAAGGAGATCACTGAAGAGAGACACACCCTTATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCCAGCTTCAGCCACAGTAGTAATTAACTTCACTGATCAGCAAAGAGAACAAAACACAAATAATGAGAACCATAACTCAGAGAGTTCGATACCGAGTATGCAAAAATGTAATATGTCTCTAGCAACATCCCAATCAAAAGAATCTGAATTCGCAACTTCACATTCCCAACAAGGGCATTCTCTCCCAATTCCTGTAAAAGGTGTGAGGTTCAATGATCTATGTATGACCTATGGTTCGACGCTTCCACCAGGGTTTCGTACTCAGTCTGGTCCACCATCAATGCCTGGTTCAGTCGTGTTTCTCGAACAAAGCTTTCAAGCAGATGCATTTTATCAATCAAATGTTAAAGAAAATAATAATTCAGAACAAATTTACGAACCTCGTGGTCTGAATGGAAACTGCGCTGCAAACCAAATGGTGTACACACAGGAACACAAATCAGAACATGCAGAAGATCAAAGACTTATCTCCCCTACCACTGATCATAGTGTCTCCAGTAGTTTCTGTAATAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGTAATTGTGGAAGTAGCAGTAATGTCGAACAAGTTACCACTTTCAGGACATCAGCAGTTTCAGATGGTAAGAATGAAGACCTCACAAACGGTGGACATTCTCATCGATCTATCCTTCGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGAAAAGAGAGATGTTATGAAAAGAAGGTTCGATACGAGAGCAGGAAGAAACTAGCAGAACAACGTCCTCGAGTTAAAGGACAATTTGTTCGCCAAATGAATCCTGATCCTCTTTCGACAGAAAAAGATTGCTAA 2049 0.4095 MGHVGITSGEKLVRVEEEEKIREEEESGTESRGGGEMKGLLRWEKFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEIMKGRPRNFDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSVSTVYKCMCRGAADYLVKPIRINELRNLWQHVWRRQSQVTANAGINGHPDETDEQQKVEATAENNAAGYRSSGEAACIQINKDLIEKGSDAQSSCTKPNMEAESGLVDNMQEFSQPKCAEAYPSETKTQDVDIHLGQALITQDSRAGGLCVANCNNGESNTNNGNDGEDQEHFRIASTSGEVHDNHYVEINSTKEAIDLIGAFRTHPNCSLKSSSIDCTGKFDDFPQLDLSLRSSHPSSFEKEITEERHTLMHSNASAFKRYTNRQLPASATVVINFTDQQREQNTNNENHNSESSIPSMQKCNMSLATSQSKESEFATSHSQQGHSLPIPVKGVRFNDLCMTYGSTLPPGFRTQSGPPSMPGSVVFLEQSFQADAFYQSNVKENNNSEQIYEPRGLNGNCAANQMVYTQEHKSEHAEDQRLISPTTDHSVSSSFCNNGNASHLNSIGYGSNCGSSSNVEQVTTFRTSAVSDGKNEDLTNGGHSHRSILREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQMNPDPLSTEKDC* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5261 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 659 IPR045279 GO:0009736
Tpr2g5261 682 ProSiteProfiles Response regulatory domain profile. 53 171 IPR001789 GO:0000160
Tpr2g5261 682 SUPERFAMILY CheY-like 52 195 IPR011006 -
Tpr2g5261 682 Gene3D - 50 245 - -
Tpr2g5261 682 MobiDBLite consensus disorder prediction 15 36 - -
Tpr2g5261 682 SMART REC_2 52 167 IPR001789 GO:0000160
Tpr2g5261 682 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 10 659 - -
Tpr2g5261 682 MobiDBLite consensus disorder prediction 443 463 - -
Tpr2g5261 682 CDD psREC_PRR 54 157 - -
Tpr2g5261 682 ProSiteProfiles CCT domain profile. 628 670 IPR010402 GO:0005515
Tpr2g5261 682 MobiDBLite consensus disorder prediction 417 436 - -
Tpr2g5261 682 Pfam CCT motif 628 670 IPR010402 GO:0005515
Tpr2g5261 682 Pfam Response regulator receiver domain 54 165 IPR001789 GO:0000160
Tpr2g5261 682 MobiDBLite consensus disorder prediction 654 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5261 Tpr-Chr2 59240692 59244782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5261 37 671 Response Regulator Gene Family AT5G24470 38.438 4.49e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Tpr2g5261 Response_reg 2.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5261 K12130 - gmx:100777119 904.049