Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5251 ATGAGTAGTCGCTTTTCTCGCACAATCTATGTTGGCAACCTGCCCTCTGATATAAGGGAATCAGAAATTGAAGATCTATTCTACAAGTATGGCCGCATCATGGAAATTGAATTGAAGGTTCCTCCTCGCCCTCCGTGTTATTGTTTTGTTGAGTTTGACAATGCACGAGATGCGGAAGATGCAATTCGGGGTCGGGATGGTTACAACTTTGATGGATGTCGACTAAGGGTGGAGCTTGCCCATGGAGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGTGGTGATGGTGGAGGCCGTGGCAGCGGCGGCGGCGGTGCTGGTGGGGGCCGTTTTGGTGTCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAGGCTGGTGATGTTTGTTTTGCTGAAGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGATACTGAATTTAGAAATCCTTGGGCGAGATCATATATTCGGGTGAGAAAGTACGAGAGCAGTCGTTCAAGGAGCCGCAGCAGGAGCCCCAGCAGGAGCAGAAGTCCGAAAAGGGCTAGAAGATCTTTGGAGCGATCTGTGTCTAGGTCACGATCTATTTCCAGGTCTAGGTCCAGGTCCAGGTCCAGATCCAGATCAGCATCACCAATCAAGCCTTCCAGGCCAAGATCACCACGATCACCACGATCAGCATCTCCACGATCACCACGCCAGGTTCTGTCTGGTGGTGGTAGTTGA 837 0.491 MSSRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGDGGGRGSGGGGAGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYESSRSRSRSRSPSRSRSPKRARRSLERSVSRSRSISRSRSRSRSRSRSASPIKPSRPRSPRSPRSASPRSPRQVLSGGGS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5251 278 Gene3D - 122 199 IPR012677 -
Tpr2g5251 278 SMART rrm1_1 8 78 IPR000504 GO:0003723
Tpr2g5251 278 SMART rrm1_1 123 196 IPR000504 GO:0003723
Tpr2g5251 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Tpr2g5251 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 186 IPR000504 GO:0003723
Tpr2g5251 278 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 269 - -
Tpr2g5251 278 CDD RRM1_SF2_plant_like 8 79 - -
Tpr2g5251 278 SUPERFAMILY RNA-binding domain, RBD 6 189 IPR035979 GO:0003676
Tpr2g5251 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Tpr2g5251 278 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 269 - -
Tpr2g5251 278 MobiDBLite consensus disorder prediction 245 272 - -
Tpr2g5251 278 MobiDBLite consensus disorder prediction 197 278 - -
Tpr2g5251 278 Gene3D - 2 119 IPR012677 -
Tpr2g5251 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Tpr2g5251 278 MobiDBLite consensus disorder prediction 81 109 - -
Tpr2g5251 278 CDD RRM2_SF2_plant_like 122 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5251 Tpr-Chr2 59155088 59159919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5251 2 206 Eukaryotic Initiation Factors Gene Family AT4G34110 23.364 2.58e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5251 K12890 - gmx:100800653 352.829