Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5249 ATGGCGGTTGCTGATAATGTTGGTGCCAAAATCGGTTCTTCAAGTCAGAATTTGGACAACAACAACAACAACACCAACAACAACGTTGTACCATCTGACTCAGCTGAGGTGGAGAAATCGAAACCTAGGACTGATCAGGATGTGAACAACAATGGTGTGTTCAACCATCAACACCAAGAAAGAGTTTCCAATGGTAACTATGGCTTCAAGACTCATCAAATGGGTCAGATGCATGCTAATGGTGTTCAGAACCAGCAGTTTGTGGTGAACAATGATGGGTATGTGATGAATGGTGTCAGAAATGGTGAGAATGGTGGCGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAAGAGCTGCTGTCGAAGCTGAATCCTATGGCTGAGGAATTTGTGCCTCCATCACTAACAAATAATCAGGGCTACTTAGCTGCTGGACCTGCTGCTGGGTTTGGTTACCCTCCTAACAATTTTATACTTTTGAATAATTATGCTAATGCTAACGGCCAAACTAACCGAAGGAGGAAGAATGGCTATACTACTAATGGGAAGCGAAGAGTGAATCATAAGATGGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTTACTGAAGAGCAGCTGGCGTCTCTCTTTCTTAATTGCGGTCAGGTTGTTGATTGCCGTGTATGCGGAGATCCCAATTCTATTCTCCGATTTGCCTTCATTGAGTTTACTGATGAAGAAAGTGCTAGGGCTGCTGTAAGCCTCTCTGGAACTATGCTGGGATATTACCCTCTGAGAGTGCTGCCTTCCAAAACTGCTATTGCACCTGTCAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAACATCGACAAGAAGCTGACTCAAGCAGATGTCAAACACTTCTTTGAATCAATCTGTGGAGAGGTCCATCGGCTGAGGCTTCTTGGGGATTACCAGCATTCAACTCGGATTGCATTTGTTGAGTTCGCGGTGGCTGAAAGTGCAATTGCTGCTCTAAGCTGCAGTGGCGTGATTTTGGGGGCGCTGCCTATAAGGGTAAGTCCGTCAAAGACACCAGTCCGAGGTCGTTCTCCTCGTAGTCCGTGA 1155 0.4494 MAVADNVGAKIGSSSQNLDNNNNNTNNNVVPSDSAEVEKSKPRTDQDVNNNGVFNHQHQERVSNGNYGFKTHQMGQMHANGVQNQQFVVNNDGYVMNGVRNGENGGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNQGYLAAGPAAGFGYPPNNFILLNNYANANGQTNRRRKNGYTTNGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAALSCSGVILGALPIRVSPSKTPVRGRSPRSP* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5249 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 362 IPR000504 GO:0003723
Tpr2g5249 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 266 IPR000504 GO:0003723
Tpr2g5249 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 276 IPR000504 GO:0003723
Tpr2g5249 384 Gene3D - 162 278 IPR012677 -
Tpr2g5249 384 Gene3D - 285 380 IPR012677 -
Tpr2g5249 384 MobiDBLite consensus disorder prediction 1 47 - -
Tpr2g5249 384 Pfam Ataxin-2 C-terminal region 120 134 IPR009818 -
Tpr2g5249 384 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 383 - -
Tpr2g5249 384 SUPERFAMILY RNA-binding domain, RBD 289 380 IPR035979 GO:0003676
Tpr2g5249 384 CDD RRM1_CID8_like 199 278 IPR034823 -
Tpr2g5249 384 SUPERFAMILY RNA-binding domain, RBD 187 277 IPR035979 GO:0003676
Tpr2g5249 384 MobiDBLite consensus disorder prediction 9 34 - -
Tpr2g5249 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 374 IPR000504 GO:0003723
Tpr2g5249 384 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 383 - -
Tpr2g5249 384 CDD RRM2_CID8_like 294 375 IPR034825 -
Tpr2g5249 384 SMART rrm1_1 202 272 IPR000504 GO:0003723
Tpr2g5249 384 SMART rrm1_1 299 370 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5249 Tpr-Chr2 59104124 59108917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5249 200 362 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 1.15e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5249 - - gmx:106794116 582.408