Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g5249 | ATGGCGGTTGCTGATAATGTTGGTGCCAAAATCGGTTCTTCAAGTCAGAATTTGGACAACAACAACAACAACACCAACAACAACGTTGTACCATCTGACTCAGCTGAGGTGGAGAAATCGAAACCTAGGACTGATCAGGATGTGAACAACAATGGTGTGTTCAACCATCAACACCAAGAAAGAGTTTCCAATGGTAACTATGGCTTCAAGACTCATCAAATGGGTCAGATGCATGCTAATGGTGTTCAGAACCAGCAGTTTGTGGTGAACAATGATGGGTATGTGATGAATGGTGTCAGAAATGGTGAGAATGGTGGCGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAAGAGCTGCTGTCGAAGCTGAATCCTATGGCTGAGGAATTTGTGCCTCCATCACTAACAAATAATCAGGGCTACTTAGCTGCTGGACCTGCTGCTGGGTTTGGTTACCCTCCTAACAATTTTATACTTTTGAATAATTATGCTAATGCTAACGGCCAAACTAACCGAAGGAGGAAGAATGGCTATACTACTAATGGGAAGCGAAGAGTGAATCATAAGATGGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTTACTGAAGAGCAGCTGGCGTCTCTCTTTCTTAATTGCGGTCAGGTTGTTGATTGCCGTGTATGCGGAGATCCCAATTCTATTCTCCGATTTGCCTTCATTGAGTTTACTGATGAAGAAAGTGCTAGGGCTGCTGTAAGCCTCTCTGGAACTATGCTGGGATATTACCCTCTGAGAGTGCTGCCTTCCAAAACTGCTATTGCACCTGTCAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAACATCGACAAGAAGCTGACTCAAGCAGATGTCAAACACTTCTTTGAATCAATCTGTGGAGAGGTCCATCGGCTGAGGCTTCTTGGGGATTACCAGCATTCAACTCGGATTGCATTTGTTGAGTTCGCGGTGGCTGAAAGTGCAATTGCTGCTCTAAGCTGCAGTGGCGTGATTTTGGGGGCGCTGCCTATAAGGGTAAGTCCGTCAAAGACACCAGTCCGAGGTCGTTCTCCTCGTAGTCCGTGA | 1155 | 0.4494 | MAVADNVGAKIGSSSQNLDNNNNNTNNNVVPSDSAEVEKSKPRTDQDVNNNGVFNHQHQERVSNGNYGFKTHQMGQMHANGVQNQQFVVNNDGYVMNGVRNGENGGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNQGYLAAGPAAGFGYPPNNFILLNNYANANGQTNRRRKNGYTTNGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAALSCSGVILGALPIRVSPSKTPVRGRSPRSP* | 385 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g5249 | 384 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 300 | 362 | IPR000504 | GO:0003723 | |
Tpr2g5249 | 384 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 203 | 266 | IPR000504 | GO:0003723 | |
Tpr2g5249 | 384 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 201 | 276 | IPR000504 | GO:0003723 | |
Tpr2g5249 | 384 | Gene3D | - | 162 | 278 | IPR012677 | - | |
Tpr2g5249 | 384 | Gene3D | - | 285 | 380 | IPR012677 | - | |
Tpr2g5249 | 384 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Tpr2g5249 | 384 | Pfam | Ataxin-2 C-terminal region | 120 | 134 | IPR009818 | - | |
Tpr2g5249 | 384 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 1 | 383 | - | - | |
Tpr2g5249 | 384 | SUPERFAMILY | RNA-binding domain, RBD | 289 | 380 | IPR035979 | GO:0003676 | |
Tpr2g5249 | 384 | CDD | RRM1_CID8_like | 199 | 278 | IPR034823 | - | |
Tpr2g5249 | 384 | SUPERFAMILY | RNA-binding domain, RBD | 187 | 277 | IPR035979 | GO:0003676 | |
Tpr2g5249 | 384 | MobiDBLite | consensus disorder prediction | 9 | 34 | - | - | |
Tpr2g5249 | 384 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 298 | 374 | IPR000504 | GO:0003723 | |
Tpr2g5249 | 384 | PANTHER | POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE | 1 | 383 | - | - | |
Tpr2g5249 | 384 | CDD | RRM2_CID8_like | 294 | 375 | IPR034825 | - | |
Tpr2g5249 | 384 | SMART | rrm1_1 | 202 | 272 | IPR000504 | GO:0003723 | |
Tpr2g5249 | 384 | SMART | rrm1_1 | 299 | 370 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g5249 | Tpr-Chr2 | 59104124 | 59108917 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g5249 | 200 | 362 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 25.749 | 1.15e-10 | 60.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g5249 | - | - | gmx:106794116 | 582.408 |