Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5247 ATGTCACATACTAGGCAAAACAAGATGATGAGTCCAAACGTTGTTCCTAGACATGTTGGTGACACAACTTATACTAAGATTTTTGTTGGTGGATTGGCTTGGGAGACTAAAAGAGACACACTCAAACGTTATTTTGATCAGTTTGGTGATATCTTAGAAGCTGTTGTCATCACTGATAGAGCCACTGGAAAATCAAAAGGATATGGCTTTGTTACCTTCAAGGATCCAAATTCTGCAATACTTGCTTGCCAAAATCCTAATCCTGTGATTGATGGAAGAAGAGCTAATTGTAATCTTGCATCTCAACAATCTGATTCAGGAAAGCAGAAAATCAATAGTCCTTCGTGGACTAATGCACCAATCCAATTACAAGGTTCATCCATATATTACAATCAACATGTACCTCAATATGCATATCCTTATCCAGTTTACAGGTACCCTCAACCTGGTTACCTTCGTCCACAAGACATTTATGAAATGAGCTATAATGCATATGGTGGACCACAATTTCCATATCGTTGGATTCCAGCATATTACCAACCCTATTATGGCCTTAGTAGACAATTAATTCCAACAACATTAGTGAAAAAGACACAATTCCATGATGTTGTTGGCATATCAGGAACTATTTCACCTTCTACTTCAATTTCTAGCATTGGAGCTGCAACAAGAGTGGTAGAATCACCCAAAGATCAAACATCTTCAAGTTAA 711 0.3755 MSHTRQNKMMSPNVVPRHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRATGKSKGYGFVTFKDPNSAILACQNPNPVIDGRRANCNLASQQSDSGKQKINSPSWTNAPIQLQGSSIYYNQHVPQYAYPYPVYRYPQPGYLRPQDIYEMSYNAYGGPQFPYRWIPAYYQPYYGLSRQLIPTTLVKKTQFHDVVGISGTISPSTSISSIGAATRVVESPKDQTSSS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5247 236 SUPERFAMILY RNA-binding domain, RBD 2 112 IPR035979 GO:0003676
Tpr2g5247 236 Gene3D - 1 113 IPR012677 -
Tpr2g5247 236 CDD RRM_RBM24_RBM38_like 25 100 - -
Tpr2g5247 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 85 IPR000504 GO:0003723
Tpr2g5247 236 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 230 - -
Tpr2g5247 236 PANTHER BOULE-RELATED 1 230 IPR037366 GO:0003729
Tpr2g5247 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Tpr2g5247 236 SMART rrm1_1 26 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5247 Tpr-Chr2 59069898 59071829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5247 21 110 C2H2 Transcription Factor Family AT2G19380 39.560 6.45e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5247 - - cam:101508568 340.502