Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5244 ATGATCCATATAAGATTTATTTTGCTCCTATGTATCCTACTTCATAATTTTCATGTCATCATTTGCAACAATAACACAGACAAAGATATACTTCTATCTTTCAAACTACAAGTAACTGATCCAAACAATGCTCTATCAAGTTGGAAACAAGATTCTAATCACTGTACCTGGTATGGTGTAAACTGTTCCAAAGTTGATGAAAGAGTTCAATCTCTAAACTTATCAGGACTTAGTCTTTCTGGTAAACTACCTTCTAATATCTCCAACCTCACTTATCTTCATACACTTGACCTTTCCAATAACAGTTTTAATGGCCAAATTCCCTTCCAATTTTCTCATCTTTCACTCCTTAGTGTCATTCAATTACCTGACAACAATCTCTCTGGTACACTTCCACCTCAATTGGGTCAACTTCATAATCTACAAATTTTGGACTTTTCTCTCAATAATCTAACAGGTAAAATTCCATCAACTTTTGGTAATCTTTTTTCTCTTAAGAATCTTTCATTGGCAAGAAACATGTTTTTTGGTGAGATTCCAAGTGAATTAGGCAATCTCCAAAATCTTTCAAGACTACAACTCTCACAGAACAATTTCACCGGCGAGATTCCTAGTTCTTTCTTCTTCAATCTCTCTTCCTTGGACTTCTTATCCTTAACAATGAACAACTTATCAGGCATTTTACCACAAAAATTCGGTGACTACTTTCCGAATTTAAGTGTACTTACTTTGGCAACTAACAGATTTGAAGGGGTGATTCCTAATTCCATATCCAATTCATCACATCTTCAGACTATTGATCTTTCTAACAATAGATTTCATGGGCCAATACCTCTTTTCACCAACTTGAAAAATCTCACTTATTTGGCTGTTAGTAATAATTTACTCACTTCCACCACATCATTGAATTTTCAATTCTTTGATTCTCTTAGAAACTCTACTCAGTTGGAAATTCTTATGATCAATGGTAACAACTTGGCTGGTGAACTTCCAAATTCTGTTGCTTATCTTTCAAGCAATCTACAACAGTTCTGTGTTGCTAATAATAAGCTAAATGGAACTATTCCTAAGGGAATGAAAAAATTTCAAAATCTCACATCCTTATCTTTTGAACATAATTATTTCACCGGCGAGTTACCATTAGAATTAGGAACACTCAAAAAATTGGTGCAGCTATTGATATACCAAAATAGATTGTCTGGTGAAATTCCAGACATATTTGGCAATTTTACAAATCTGTTTATTCTTGCTTTAGGAAACAACCAGTTCTCAGGTAGAATTCCCACAAGTATCGGACAATGTGAGGAATTGAATATACTTGACTTAGAAATGAATAAGCTTGTTGGTGTCATACCAATCGAGATTTTTCAACTCTCTGGCTTGACAACTTTGTACTTACATGGAAATTCTTTGAACGGTTCGCTTCCTCCTGTATGCAACATGGAGCAGCTAGTGACAATGTTTGTTTCGAACAACCAGCTGTCGGGGAACATTCCTGAAATCAAAGCAAACGGCTTGAAGATGCTTTTGATGGAAAGAAACAAATTTAGTGGCTCAATTCCAAATAGTCTAGGGGATTTAGCATCCCTTGAGACATTGGATTTATCATCAAACAATCTCGCTGGTTCAATTCCTGAGAGTTTAGAAAATCTCAAATATATGGTCAGCTTAAATTTGTCTTTCAACAAATTGGAAGGAAAGGTTCCTATGAAAGGTGTTTTTATGAACCTAAGCCAGGTTGATCTCCAAGGTAACAACAAACTATGTGGCGTTAACAATCAAGTTATGCACAAGTTAGGAGTCACTTTGTGTGTTGCAGGTAAGAAAAAGAACAGAAACATTTTACTTCCTATCATACTCGGCATTATAGGCGTGACTGTTTTGTTCGTGTCAATGATCTATCTACTGTGGCGGCTAATGTCCTTAAAGAAGAAACACAAGGAGGAGATAAGAACTTTGTCATCAACTCCTCTAAAGGGGCTGCATCAAAATATATCCTATGGTGATATTAGGCTTGCTACAAACAATTTTTCAGCTGCAAACATGGTTGGAAAAGGGGGCTTTGGATCTGTTTACAAGGGTGTGTTCAACATCAGCACTTGTGAGAGTCAAACTACCACACTTGCTGTTAAAATTCTGGACCTGCAACAAAGCAAAGCCTCTCAGAGTTTTAATGCAGAATGTGAAACTTTGAAAAATGTTCGTCATCGGAATCTGGTCAAGGTGATCACTTCTTGCTCCAGCACTGATTACAAGGGGGATGATTTTAAGGCCCTTGTTATGCAATTCATGCCTAATGGTAATTTAGAGATGATTTTATACCCGGAAGATCTTGAGTCGGGTTCTTCACTAACCTTGTTGCAAAGATTAAACATTGCCATTGATGTTGCATCTGCCATGGACTACTTGCACAATGACTGTGATCCACCAATAGTCCATTGTGATCTGAAACCTGCCAATGTCCTAATAGATGAAGATATGGTTGCGCATGTGGCAGATTTTGGATTGGCGAGGTTTCTCTCTCAAAATCCATCAGAGAAACATAGTAGCACTCTAGAATTGAAGGGATCGATCGGCTATATCGCCCCAGAATATGGTCTAGGTGGAAAGGCTTCAACTAGTGGCGATGTGTACAGTTTCGGAATCCTATTTCTAGAGATGTTCATAGCGAAAAAACCAACGGATGAAATGTTCAAAGAAGGATTAAGCATGAACAAATTTGTATTAGACATGGATGACAAGCAATTACTTAAGGTTGTTGATCAAAGACTTATCAACCAATTTGAGTATTCAACACAAAATTTCAGCAGTGATTGTAATAGTAGTAGGTCTATCGACAACAGTTACAGTGACGGCATCCCAGTTTGGATGCACAAAGCTGAGGAGTGCATAGCTGCTTCAATGAGAGTTGGCTTGTCATGTATATCTTATCATCCTAAAGATCGGTGGACAATGAGAGAAGCCTTATCAAAATTGCATGGAATTAAGCAGTCTATACTAGGCTTGTGA 3009 0.3709 MIHIRFILLLCILLHNFHVIICNNNTDKDILLSFKLQVTDPNNALSSWKQDSNHCTWYGVNCSKVDERVQSLNLSGLSLSGKLPSNISNLTYLHTLDLSNNSFNGQIPFQFSHLSLLSVIQLPDNNLSGTLPPQLGQLHNLQILDFSLNNLTGKIPSTFGNLFSLKNLSLARNMFFGEIPSELGNLQNLSRLQLSQNNFTGEIPSSFFFNLSSLDFLSLTMNNLSGILPQKFGDYFPNLSVLTLATNRFEGVIPNSISNSSHLQTIDLSNNRFHGPIPLFTNLKNLTYLAVSNNLLTSTTSLNFQFFDSLRNSTQLEILMINGNNLAGELPNSVAYLSSNLQQFCVANNKLNGTIPKGMKKFQNLTSLSFEHNYFTGELPLELGTLKKLVQLLIYQNRLSGEIPDIFGNFTNLFILALGNNQFSGRIPTSIGQCEELNILDLEMNKLVGVIPIEIFQLSGLTTLYLHGNSLNGSLPPVCNMEQLVTMFVSNNQLSGNIPEIKANGLKMLLMERNKFSGSIPNSLGDLASLETLDLSSNNLAGSIPESLENLKYMVSLNLSFNKLEGKVPMKGVFMNLSQVDLQGNNKLCGVNNQVMHKLGVTLCVAGKKKNRNILLPIILGIIGVTVLFVSMIYLLWRLMSLKKKHKEEIRTLSSTPLKGLHQNISYGDIRLATNNFSAANMVGKGGFGSVYKGVFNISTCESQTTTLAVKILDLQQSKASQSFNAECETLKNVRHRNLVKVITSCSSTDYKGDDFKALVMQFMPNGNLEMILYPEDLESGSSLTLLQRLNIAIDVASAMDYLHNDCDPPIVHCDLKPANVLIDEDMVAHVADFGLARFLSQNPSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILFLEMFIAKKPTDEMFKEGLSMNKFVLDMDDKQLLKVVDQRLINQFEYSTQNFSSDCNSSRSIDNSYSDGIPVWMHKAEECIAASMRVGLSCISYHPKDRWTMREALSKLHGIKQSILGL* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5244 1002 SMART LRR_typ_2 90 113 IPR003591 -
Tpr2g5244 1002 SMART LRR_typ_2 211 234 IPR003591 -
Tpr2g5244 1002 SMART LRR_typ_2 386 409 IPR003591 -
Tpr2g5244 1002 SMART LRR_typ_2 410 434 IPR003591 -
Tpr2g5244 1002 SMART LRR_typ_2 527 551 IPR003591 -
Tpr2g5244 1002 SMART LRR_typ_2 458 482 IPR003591 -
Tpr2g5244 1002 SMART LRR_typ_2 283 309 IPR003591 -
Tpr2g5244 1002 SMART LRR_typ_2 138 161 IPR003591 -
Tpr2g5244 1002 SMART LRR_typ_2 236 259 IPR003591 -
Tpr2g5244 1002 SMART LRR_typ_2 186 210 IPR003591 -
Tpr2g5244 1002 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Tpr2g5244 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Tpr2g5244 1002 PANTHER RECEPTOR-LIKE PROTEIN 55 83 165 - -
Tpr2g5244 1002 PANTHER RECEPTOR-LIKE PROTEIN 55 1 88 - -
Tpr2g5244 1002 PANTHER RECEPTOR-LIKE PROTEIN 55 162 993 - -
Tpr2g5244 1002 Gene3D Ribonuclease Inhibitor 23 178 IPR032675 -
Tpr2g5244 1002 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515
Tpr2g5244 1002 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Tpr2g5244 1002 ProSiteProfiles Leucine-rich repeat profile. 529 552 IPR001611 GO:0005515
Tpr2g5244 1002 SUPERFAMILY RNI-like 207 571 - -
Tpr2g5244 1002 ProSiteProfiles Protein kinase domain profile. 677 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g5244 1002 Gene3D Ribonuclease Inhibitor 280 599 IPR032675 -
Tpr2g5244 1002 SMART LRR_sd22_2 458 483 - -
Tpr2g5244 1002 SMART LRR_sd22_2 338 367 - -
Tpr2g5244 1002 SMART LRR_sd22_2 527 553 - -
Tpr2g5244 1002 SMART LRR_sd22_2 283 304 - -
Tpr2g5244 1002 SMART LRR_sd22_2 138 170 - -
Tpr2g5244 1002 ProSitePatterns Protein kinases ATP-binding region signature. 683 711 IPR017441 GO:0005524
Tpr2g5244 1002 SUPERFAMILY L domain-like 25 298 - -
Tpr2g5244 1002 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 88 - -
Tpr2g5244 1002 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 162 993 - -
Tpr2g5244 1002 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 83 165 - -
Tpr2g5244 1002 SUPERFAMILY Protein kinase-like (PK-like) 653 992 IPR011009 -
Tpr2g5244 1002 Pfam Protein tyrosine and serine/threonine kinase 680 900 IPR001245 GO:0004672|GO:0006468
Tpr2g5244 1002 Gene3D Ribonuclease Inhibitor 179 279 IPR032675 -
Tpr2g5244 1002 Gene3D Phosphorylase Kinase; domain 1 658 763 - -
Tpr2g5244 1002 Gene3D Transferase(Phosphotransferase) domain 1 764 999 - -
Tpr2g5244 1002 PRINTS Leucine-rich repeat signature 93 106 - -
Tpr2g5244 1002 PRINTS Leucine-rich repeat signature 527 540 - -
Tpr2g5244 1002 SMART serkin_6 677 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5244 Tpr-Chr2 59027791 59031389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5244 24 997 Receptor kinase-like Gene Family AT3G47570 40.967 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr2g5244 PK_Tyr_Ser-Thr 3.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5244 - - mtr:MTR_3g092390 1632.46