Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5243 ATGATCCATATAAGACTTATTTTGCTCCTATGTTTACTTCTTCATAATTTTCATGTCATCATTTCCAACAATAGCACCACAGACAAAGATATCCTTATATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTCTATCCAGTTGGGGACAAGATTCTAGTCACTGTTCCTGGTATGGTGTCAACTGTTCCAAAGTTGATGAAAGAGTTCAATCTCTAAACTTATCAGGACTTAGACTTTCTGGTAAACTACCTTCTGACCTCTCCAACCTCACTTATCTTCATACACTTGACCTTTCCAATAACAGTTTTGATGGCCAAATTCCCTTCCAATTTTCTCATCTTTCACTCCTTAGTGTCATTCAATTACCTTACAACAATCTCTCTGGTACACTTCCACCTCAATTGGGTCAACTTCATAATCTACAAATTTTGGACTTTTCTGTCAATAATCTAACAGGTAAAATTCCATCAACTTTTGGTAATCTTTTTTCTCTTAAGAATCTTTCATTGGCAAGAAACATGTTTTTTGGTGAGATTCCAAGTGAATTAGGCAATCTCCACAATCTTTCAAGACTACGACTCTCACAGAACAATTTCACCGGTGAGATTCCTACTTCTTTCTTCTTCAATCTCTCTTCCTTGGACTTCTTATCCTTAACAAAGAACAACTTATCAGGCATTTTGCCACAAAGATTCGGTGACGCCTTTCCGAATTTAAGGACACTTACTTTGGCAACTAATAGATTTGAAGGGGTGATTCCTAATTCCATATCCAATTCATCACATCTTAAAATTATTGATCTTGCTAACAATAGATTTCATGGGCCAATACCCCTTTTTACCAACTTGAAAAATCTCACTTATTTGATTCTTAGTAATAATTTGCTCACTTCCACCACATCATTGAATTTTCAATTCTTTGATTCTCTAAGAAACTCCACTCAGTTGGAAATTCTTATGGTCAATCATAACAACTTGGCTGGTGAACTTCCAAATTCTGTTGCTTATCTTTCAAGCAATCTACAACAGTTCCTTGTTGGGCATAATAAGCTAACTGGAACTATTCCTCAGGGAATGAAAAAATTTCAAAATCTCACATCCTTATCTTTTGAACATAATTATTTCACCGGCGAGTTACCATTAGAATTAGGAACACTCAAGAAATTGGTGCAGCTATTGATATACCAAAATAGATTGTCTGGTGAAATTCCAGACATATTTGGCAATTTTACAAATCTGTTTATTCTTGCATTAGGAAACAACCGGTTCTCAGGTAGAATTCCCACAAGTATCGGACAATGTGAGAGATTGAATATACTTGACTTAGAAATGAATAATCTTGTTGGTGTCATACCAATGGAGATTTTTCAACTCTCTGGCTTGACAGCTTTGTACTTACATGGAAATTCTTTGAACGGTTCTCTTCCTCCTGTATCCGACATGGAGCAGCTAGAGATGATGTATGTTTCGAACAACATGCTGTCGGGGAATATTCCTGAAATCAAAGCAAGTGGCTTGAAGATACTTTTGATGGAAAGAAACAAATTTAGTGGCTCAATTCCAAATAGTCTAGGGGATTTAGTATCCCTTGAAACACTGGATTTATCATCAAACAATCTCACTGGTTCAATTCCTGAGAGTTTAGAAAATCTCAAATATATGGTCAGCTTAAATTTCTCTTTCAACAAATTGGAAGGAGAGGTTCCTATGAAAGGTGTTTTCATGAACCTAAGCCAGGTTGATCTCCAAGGTAACAACAAACTATGTGGCCTTAACAATCAAGTTATGCATAAGTTGGGAGTTAATTTGTGTGTTGCAGGTAAGAAAAAGAAGAAAAGCATTTTACTTCCTATCATACTAGGGATCATAGGCGCGACTGTTTTGTTCGTGTCAATGATCTATCTACTGTGGCGGCTAATGTCCTTAAAGAAGAAACACAAGAAGGAGATAAGAACTTTGTCATCAACTCCTCTAAAGGGGCTGCCTCAAAATATATCCTATGGTGATATTAGGCTTGCTACAAACAATTTTTCAGCTGCAAATTTAGTTGGAAAAGGAGGCTTTGGCTCTGTTTACAAGGGTGTGTTCGACATCAGCAGTTATGAAAGTCAAACCACAACGCTTGCTGTTAAAGTTCTTGACTTGCAACAAAGCAAAGCCTCTCAGTGTTTTAGTGCAGAATGTGAAGCTTTGAAAAATGTTAGGCATCGGAATCTGGTCAAGGTGATCACTTCTTGCTCCAGTACTGATTACAAGGGGGATGATTTTAAGGCTCTTGTGATGCAATTCATGCCGAATGGTAATTTGGAGATGAGTTTATACCCAGAAGATCTTGAGTCAGGATATTCGCTGACCTTGTTGCAAAGGTTAAACATTGCCATTGATGTTGCATCTGCCATGGACTACTTGCACAATGACTGTGATCCACCAATAGTCCATTGTGATCTGAAACCTGCCAATGTCCTATTAGATGAAAATATGGTTGCACATGTGGCAGATTTTGGATTGGCAAGGTTTATCTCTCAAAATCCATCAGAAAAACATAGCAGCACTCTTGAATTGAAGGGATCGATCGGCTATATCGCCCCAGAATATGGTCTTGGTGGAAAGGCTTCAACTAGTGGTGATGTATACAGTTTTGGAATCCTACTTCTAGAGATGTTCGTAGCCAAAAAACCAACTGATGAAATGTTCAAAGAAGGATTAAGCATGAACAAATTTGTATTAGACATGGATGACAAGAAATTACTTAAGGTTGTTGATCAAAGACTTATCAACCAATTTGAGTATTCAACACAAAATTTCAGCAGTGATTGTCATAGTAGTAGTGCGTCTGTCGACAACAGTTACAGTGACAGTATTCCAGATTGGATGCACAAAGCTGATAAGTGTATAGCTGCTTCAATGAGAGTTGGCTTATCATGTGCATCACATCATCCTAAAGATCGGTGGACAATGAGAGAAGCCTTATCAAAATTGCATGGAATTAAGCAGTCTATACTAGGCTTGTGA 3015 0.3731 MIHIRLILLLCLLLHNFHVIISNNSTTDKDILISFKLQVTDPNNALSSWGQDSSHCSWYGVNCSKVDERVQSLNLSGLRLSGKLPSDLSNLTYLHTLDLSNNSFDGQIPFQFSHLSLLSVIQLPYNNLSGTLPPQLGQLHNLQILDFSVNNLTGKIPSTFGNLFSLKNLSLARNMFFGEIPSELGNLHNLSRLRLSQNNFTGEIPTSFFFNLSSLDFLSLTKNNLSGILPQRFGDAFPNLRTLTLATNRFEGVIPNSISNSSHLKIIDLANNRFHGPIPLFTNLKNLTYLILSNNLLTSTTSLNFQFFDSLRNSTQLEILMVNHNNLAGELPNSVAYLSSNLQQFLVGHNKLTGTIPQGMKKFQNLTSLSFEHNYFTGELPLELGTLKKLVQLLIYQNRLSGEIPDIFGNFTNLFILALGNNRFSGRIPTSIGQCERLNILDLEMNNLVGVIPMEIFQLSGLTALYLHGNSLNGSLPPVSDMEQLEMMYVSNNMLSGNIPEIKASGLKILLMERNKFSGSIPNSLGDLVSLETLDLSSNNLTGSIPESLENLKYMVSLNFSFNKLEGEVPMKGVFMNLSQVDLQGNNKLCGLNNQVMHKLGVNLCVAGKKKKKSILLPIILGIIGATVLFVSMIYLLWRLMSLKKKHKKEIRTLSSTPLKGLPQNISYGDIRLATNNFSAANLVGKGGFGSVYKGVFDISSYESQTTTLAVKVLDLQQSKASQCFSAECEALKNVRHRNLVKVITSCSSTDYKGDDFKALVMQFMPNGNLEMSLYPEDLESGYSLTLLQRLNIAIDVASAMDYLHNDCDPPIVHCDLKPANVLLDENMVAHVADFGLARFISQNPSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEMFVAKKPTDEMFKEGLSMNKFVLDMDDKKLLKVVDQRLINQFEYSTQNFSSDCHSSSASVDNSYSDSIPDWMHKADKCIAASMRVGLSCASHHPKDRWTMREALSKLHGIKQSILGL* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5243 1004 SUPERFAMILY L domain-like 28 311 - -
Tpr2g5243 1004 SUPERFAMILY RNI-like 218 573 - -
Tpr2g5243 1004 Gene3D Phosphorylase Kinase; domain 1 660 764 - -
Tpr2g5243 1004 Gene3D Ribonuclease Inhibitor 406 504 IPR032675 -
Tpr2g5243 1004 Gene3D Ribonuclease Inhibitor 236 335 IPR032675 -
Tpr2g5243 1004 Gene3D Ribonuclease Inhibitor 26 179 IPR032675 -
Tpr2g5243 1004 SUPERFAMILY Protein kinase-like (PK-like) 653 994 IPR011009 -
Tpr2g5243 1004 Gene3D Transferase(Phosphotransferase) domain 1 765 1001 - -
Tpr2g5243 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Tpr2g5243 1004 Pfam Protein tyrosine and serine/threonine kinase 682 901 IPR001245 GO:0004672|GO:0006468
Tpr2g5243 1004 SMART LRR_typ_2 459 485 IPR003591 -
Tpr2g5243 1004 SMART LRR_typ_2 237 260 IPR003591 -
Tpr2g5243 1004 SMART LRR_typ_2 528 552 IPR003591 -
Tpr2g5243 1004 SMART LRR_typ_2 284 310 IPR003591 -
Tpr2g5243 1004 SMART LRR_typ_2 139 162 IPR003591 -
Tpr2g5243 1004 SMART LRR_typ_2 212 235 IPR003591 -
Tpr2g5243 1004 SMART LRR_typ_2 91 114 IPR003591 -
Tpr2g5243 1004 SMART LRR_typ_2 187 211 IPR003591 -
Tpr2g5243 1004 SMART LRR_typ_2 411 435 IPR003591 -
Tpr2g5243 1004 SMART LRR_typ_2 387 410 IPR003591 -
Tpr2g5243 1004 Gene3D Ribonuclease Inhibitor 505 597 IPR032675 -
Tpr2g5243 1004 SMART serkin_6 678 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g5243 1004 Gene3D Ribonuclease Inhibitor 180 235 IPR032675 -
Tpr2g5243 1004 Gene3D Ribonuclease Inhibitor 336 405 IPR032675 -
Tpr2g5243 1004 ProSitePatterns Protein kinases ATP-binding region signature. 684 712 IPR017441 GO:0005524
Tpr2g5243 1004 SMART LRR_sd22_2 139 171 - -
Tpr2g5243 1004 SMART LRR_sd22_2 528 554 - -
Tpr2g5243 1004 SMART LRR_sd22_2 284 305 - -
Tpr2g5243 1004 SMART LRR_sd22_2 339 368 - -
Tpr2g5243 1004 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Tpr2g5243 1004 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Tpr2g5243 1004 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Tpr2g5243 1004 ProSiteProfiles Protein kinase domain profile. 678 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g5243 1004 ProSiteProfiles Leucine-rich repeat profile. 530 553 IPR001611 GO:0005515
Tpr2g5243 1004 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 80 163 - -
Tpr2g5243 1004 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 162 995 - -
Tpr2g5243 1004 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 88 - -
Tpr2g5243 1004 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Tpr2g5243 1004 Pfam Leucine Rich Repeat 530 552 IPR001611 GO:0005515
Tpr2g5243 1004 PANTHER RECEPTOR-LIKE PROTEIN 55 162 995 - -
Tpr2g5243 1004 PANTHER RECEPTOR-LIKE PROTEIN 55 80 163 - -
Tpr2g5243 1004 PANTHER RECEPTOR-LIKE PROTEIN 55 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5243 Tpr-Chr2 59004873 59008356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5243 27 999 Receptor kinase-like Gene Family AT3G47570 39.723 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr2g5243 PK_Tyr_Ser-Thr 6.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5243 - - mtr:MTR_3g092390 1582.39