Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5242 ATGATGTTGCAGCACCAGAATCATCACCACCGTTTATTTTCCTCTGATCATGATGATTCTTCTGCTATTCCTGATGGTTATGGTCCCACAAGCTACATCATGTCTTTTGGCGGTGATTCTGATTCCTCTGCTCTAGATGCTACCACCATTGATAATAGCGGTGTACCTTTAACTTTGCAGCCTTTCCACAACATTTCTGCTACCACAGCTCTCAAACCCTCAGTTACAGCAGTTGGAATGGCGGCTTCATCAGGATCCCCTTTTACATATTCACAATGGAAAGAGCTTGAAAGACAAGCTATGATTTACAAGTATTTGGTGGCTTCTCTTCCTGTTCCTACTGAACTTCTCTCATTGGATCCTAGTTTCAATAAGAAGTCATCATCAAGAAATAAAAGTAATAATGATCCAGAAGAAGGTAGATGCAGAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGAAGTGGCTCCTAATAACAAGTATTGCGAAAGACATATGCATAGAGGTCGTTCTCGTCCCCGTTCAAGAAAGCATGTGGAACTTCACACCAATGACAATAGTCATAATCAAATAAAAAAGACTGTGGCTATGCCTAATTCAATTATAAGGACATATGGTGGATCTTCATCACATTTTCATGCTTCCACTTGTTTTCAACCTTATCAACAAACTTTCCTTTGTTTGGAGAATAATGGCTTTGTGATCAAAACTCAAAGTTTTGACTTTTCAAATAAGCAGCCAAGGGGCTTGGAGTGGATGCAAAATGGAGATCCAATATATCTTGGTGCTTCTAACTCAGGATGGCACTCTCTGATGCATAACAACAGACTTGGATTAACCAATGAAAGTTCCTATCAAAATAACACTGAATTTCAGTATATGAATTCATTTCCACTATATACTACTTCTGAACTTTCTCAACAAGAAAAACCCTTTTCTCTCTTCTTTAATTCCCTTACTGTTCCAATGCAAATTCTCCAATATGAGAAACCAAGAGATTTTAGTTTCATTGATGCATGGTCTAATGCAGAAACAGTGGAAAACAATGCTAACACCAACCACAATGTTTCTGCCACATCAATTGGTAACTTCTCTCTTTCATCTCTTGATTTACCAATGGGAGGTCCATTAGGTGAAGTTTTGAGGCAAAGCAGTGTAACTTCCATCAGTGATGCAACAAACTCTAATCCATGTTCACCTGTTGGAATAAACCATGTTGAATCTATTGAAACTTCAGCAACAGGAATGTTTTCATCTCCTTCTGGTGTTTTGCATCTTTCTGATAGTAGTGGTAATAGTACACCTACTATTGCTTCATCAAGGGTCAATTCTGAAATTGCCTTACTCAAATACTTCAATCAAATGTCTTAA 1374 0.3792 MMLQHQNHHHRLFSSDHDDSSAIPDGYGPTSYIMSFGGDSDSSALDATTIDNSGVPLTLQPFHNISATTALKPSVTAVGMAASSGSPFTYSQWKELERQAMIYKYLVASLPVPTELLSLDPSFNKKSSSRNKSNNDPEEGRCRRTDGKKWRCSREVAPNNKYCERHMHRGRSRPRSRKHVELHTNDNSHNQIKKTVAMPNSIIRTYGGSSSHFHASTCFQPYQQTFLCLENNGFVIKTQSFDFSNKQPRGLEWMQNGDPIYLGASNSGWHSLMHNNRLGLTNESSYQNNTEFQYMNSFPLYTTSELSQQEKPFSLFFNSLTVPMQILQYEKPRDFSFIDAWSNAETVENNANTNHNVSATSIGNFSLSSLDLPMGGPLGEVLRQSSVTSISDATNSNPCSPVGINHVESIETSATGMFSSPSGVLHLSDSSGNSTPTIASSRVNSEIALLKYFNQMS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5242 457 Pfam WRC 137 178 IPR014977 -
Tpr2g5242 457 SMART QLQ_2 86 122 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr2g5242 457 ProSiteProfiles WRC domain profile. 136 180 IPR014977 -
Tpr2g5242 457 MobiDBLite consensus disorder prediction 123 147 - -
Tpr2g5242 457 PANTHER - 60 442 IPR031137 GO:0005634|GO:0006351|GO:0032502
Tpr2g5242 457 PANTHER GROWTH-REGULATING FACTOR 7 60 442 - -
Tpr2g5242 457 Pfam QLQ 87 117 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr2g5242 457 MobiDBLite consensus disorder prediction 131 147 - -
Tpr2g5242 457 ProSiteProfiles QLQ domain profile. 87 122 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5242 Tpr-Chr2 58999768 59003235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5242 87 181 GRF Transcription Factor Family AT5G53660 64.211 8.07e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tpr2g5242 WRC 3.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5242 - - mtr:MTR_3g092330 528.48