Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5237 ATGGTGTTAGGTTGGGGAAGAAGGAAGAAGAACAACAAAAACAACAAAGGTTTAAAACCAAACATGGAAGTGGTGATTCCAAATCAATTTAAGTGTCCAATTACTCTTGATTTGATGAAAGATCCTGTTACATTGTCAACAGGAATCACCTATGATAGAGAAAGTGTCGAAAGATGGTTCGATGAAGGAAACTATACTTGTCCACTCACAAATCAAATTGTGAAGAATTTTGACATGATTCCAAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTTGAAAATAGTAAAAATGGTGTTGAGAGGATTCCGACACCAAGAATACCGATTAGTCCTATCGATGTTTCTGAGCTTCTTTTTCGAGTTATGGAATCGGTAAAAGGTTTGGATCAATATGGTTGTATTGGATTGGTGCAAAAAATGGAGAAATGGAGTAATGAAAGTGAGAGGAACAAAAAATGTATAGTTGAAAATGGAGCAACAAGTGCATTGGCTTTAGCATTTGATGCTTTTGCTAATGATTCTATTGAGAGAAATGTTGTTGTTCTAGAAGTGATTTTATCAGCACTTAATTGGATGTTTCCACTTCAATTAGAAGCTCAAAAAAGCTTAGGCTCAAAAGCTTCTTTACATTGCATGGTTTGGTTTTTGAAGCATCAAGATGTTAAGGGAAAAGAAAAAGCTATTATTGCATTGAAAGAGATTCTTTCTTTTGGTGATGAGAAGCATGTGGAAGCACTTTTAGAGATTGAAGGTGTTAATCAGCTTTTAATTGAGTTGATTAACAAGAGAATTAGTCCAATAATTACAAAAGCTTCATTGAGGGTAATTTGGTACTTGGTTTCATCTAATTCCAATTTTAATGAAAAAATGAAATTTTCATTTGTTGAATTGGATTTACTTTCTTCAATTTTGAACATTCTTATTGATTCAGAAAAAAGCTTTTGTGAAAAAGCTTTGGTTATTTTGGATTCTTTATTAAGCTGTGATTTTGGAAGGAAAAAAGCTTATGAAAATGATTTAACAATTCCATTGTTGGTGAAAAAAATATTGAGAGTTTCACCATTGACTACAGAGTACTCTGTTTCTTCTATTTGGAAAATGTGCAAATATGAAGAGAAAAACTATGAAGGAAAAGCTTTGATAGAAGCACTTCAAGTTGGTGCTTTTCAGAAGCTATTATTGGTATTACAAGTTGGTTGTAGTGATGACACAAAAGATAAAGCAACTGAGCTTCTCAAATTGATGAATCCTTATAGGGCTGAATTGGAAGAATGCATTGATTCAGATTTCAAGAATCTTAAGAGATCATATTAA 1320 0.325 MVLGWGRRKKNNKNNKGLKPNMEVVIPNQFKCPITLDLMKDPVTLSTGITYDRESVERWFDEGNYTCPLTNQIVKNFDMIPNHSLRIMIQDWCVENSKNGVERIPTPRIPISPIDVSELLFRVMESVKGLDQYGCIGLVQKMEKWSNESERNKKCIVENGATSALALAFDAFANDSIERNVVVLEVILSALNWMFPLQLEAQKSLGSKASLHCMVWFLKHQDVKGKEKAIIALKEILSFGDEKHVEALLEIEGVNQLLIELINKRISPIITKASLRVIWYLVSSNSNFNEKMKFSFVELDLLSSILNILIDSEKSFCEKALVILDSLLSCDFGRKKAYENDLTIPLLVKKILRVSPLTTEYSVSSIWKMCKYEEKNYEGKALIEALQVGAFQKLLLVLQVGCSDDTKDKATELLKLMNPYRAELEECIDSDFKNLKRSY* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5237 439 SUPERFAMILY RING/U-box 24 100 - -
Tpr2g5237 439 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Tpr2g5237 439 PANTHER WDSAM1 PROTEIN 14 439 IPR045185 GO:0061630
Tpr2g5237 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
Tpr2g5237 439 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Tpr2g5237 439 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 439 - -
Tpr2g5237 439 CDD RING-Ubox_PUB 30 72 IPR045210 -
Tpr2g5237 439 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
Tpr2g5237 439 Gene3D - 136 432 IPR011989 -
Tpr2g5237 439 SUPERFAMILY ARM repeat 142 417 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5237 Tpr-Chr2 58929259 58930938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5237 19 439 U-box Gene Family AT5G37490 42.317 2.78e-109 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5237 - - gmx:100794340 649.432