Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5221 ATGGAAGGAGGAGGAATGTTATCATCATCTTCATCTTCATCACATTCACAAAACTATATCTACAGAGAGTGTTTAAGAAACCATGCAGCAAGCCTCGGAAGCTACGCTACCGACGGCTGTGGAGAATTCACTTTCGACGACACCTCACCATCGGCTGCAAGCAGTCTCCAATGTGCAGCCTGCGGCTGTCACCGGAACTTCCATCGCAAAATAACCGCAATTGTGAGGGAGAATGCTGCCGTCACAATGTCGGATCAGGTGATGGAATATTCCGGTGGAGGAGGTAGCGGTGGAGATGGAAGGAGGAAGAGGTACCGGACGAAATTCACGGCAGATCAGAAGGAAAAGATGTTGGGATTTGCTGAGAAGTTAGGATGGAAATTGCAGAGAAAAGAACTTGATGAAGAGATTGAAAGGTTTTGTGAAAGTGTTGGTGTGAGTAGACAAGTTTTTAAGGTTTGGATGCATAATCATAAGAATTCTTGTTTCGCTAATTCTTCTGACCCTTCTACTGGTAATGCTAATTCCTCTCTTACTCAGTAG 543 0.4494 MEGGGMLSSSSSSSHSQNYIYRECLRNHAASLGSYATDGCGEFTFDDTSPSAASSLQCAACGCHRNFHRKITAIVRENAAVTMSDQVMEYSGGGGSGGDGRRKRYRTKFTADQKEKMLGFAEKLGWKLQRKELDEEIERFCESVGVSRQVFKVWMHNHKNSCFANSSDPSTGNANSSLTQ* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5221 180 Gene3D - 88 165 - -
Tpr2g5221 180 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 70 IPR006456 -
Tpr2g5221 180 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 71 IPR006456 -
Tpr2g5221 180 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 17 168 - -
Tpr2g5221 180 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 168 - -
Tpr2g5221 180 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 102 160 IPR006455 -
Tpr2g5221 180 SUPERFAMILY Homeodomain-like 89 160 IPR009057 -
Tpr2g5221 180 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5221 Tpr-Chr2 58720424 58721129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5221 21 161 ZF-HD Transcription Factor Family AT4G24660 43.195 1.46e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr2g5221 ZF-HD_dimer 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5221 - - cmo:103504587 231.876