Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5218 ATGTTAGCTAATAGCTTATCTCCATCTTCACTTCCATCTTCTGAACCTTTTTCTTGCAATGAAAATGGCACTTCTTCCACTAATAAAAGGAAAAGAAGACCCGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCAAAAACATTATTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAAAATTTACAGATGCATAGAAGAAGGCATAAGGTACCATGGAAGTTATTGAAGAGAGAAACACCAGTTGTGAGAAAAAGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGATCTTGTTGGTATCAAAAAACATTTTAGAAGGAAACATAGTAATCATAAACAATGGGTTTGTGAAAGATGCTCTAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGTACTAGAGGTCATTCTTGTGATTGTGGTCGTGTTTTCTCAAGGGTTGAGAGTTTTATTGAGCACCAAGATGCTTGTAACATGGGAAGGATCCATAATTCAGAATCTCATCCACTACAAACACCAACTGCATGCTTATCAAGAACAGCTTCAAGTCCAAGTCCATCAAGTGAAACAAACTTCACCACATATCCATGGCAAACAAGACTTCAAGTCATGCAAAAATCAACAAATGAATCAACAATTTTCATGAACCCTATTACTCCTCTTACTACTATTACACCTCCTTCTCAAACCTCATCCAAGAATAATAAACTTCTACATCCAAACTTGGAACTTCAACTCTCAACCATAAACAACACCAATACCAACATCACCAACATGTCTCTGGCACCAGACACACCTTCGATAAGAAGTATCAGTGCTGCAGAGGCTATTCAGAAGGTTAATCGGTCAACTCAGTTGAATCTCTCAATTGGTTCATCAAATATGAGTGAGAAAAATGAATCAAACAATAGAAACAAGTCAAACTCATCACCTAAAGAGAGTAGCAATAGCAATGAGAAAGTTCAATCAACAACAACAAACAACATGGCTTTGGTGAGGGTTCAAGAACAAGCAAAGGAACAATTAAGGATAGCTATGGCTGAAAAAGCTTATGCTGAAGAAGCAAGGAAACAAGCAAAGAAACAAATTGAAATGGCTGAACAAGAATTCAACAATGCAAAGAGAATTAGACAACAAGCACAAGGTGAACTTGATAAAGCTTATGGATTGAAACAACATGCAATCAAGCAAATCAATTCAACTATGCTTCAAATTACTTGTCAAGCATGCAAGCAACAATTTCAACATGAAGATAACTCATTGGTGTTGAGCTATGTTTCTTCAGCTATAACAACTGAAGGTGGCGAAGTAGAAAATGATGATGGAAAAGGCAAAACAACTAACTAA 1425 0.3733 MLANSLSPSSLPSSEPFSCNENGTSSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRIHNSESHPLQTPTACLSRTASSPSPSSETNFTTYPWQTRLQVMQKSTNESTIFMNPITPLTTITPPSQTSSKNNKLLHPNLELQLSTINNTNTNITNMSLAPDTPSIRSISAAEAIQKVNRSTQLNLSIGSSNMSEKNESNNRNKSNSSPKESSNSNEKVQSTTTNNMALVRVQEQAKEQLRIAMAEKAYAEEARKQAKKQIEMAEQEFNNAKRIRQQAQGELDKAYGLKQHAIKQINSTMLQITCQACKQQFQHEDNSLVLSYVSSAITTEGGEVENDDGKGKTTN* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5218 474 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Tpr2g5218 474 MobiDBLite consensus disorder prediction 311 355 - -
Tpr2g5218 474 MobiDBLite consensus disorder prediction 1 25 - -
Tpr2g5218 474 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Tpr2g5218 474 Gene3D Classic Zinc Finger 36 98 - -
Tpr2g5218 474 PANTHER OS03G0310200 PROTEIN 1 460 IPR039288 GO:0009630
Tpr2g5218 474 SMART c2h2final6 58 80 IPR013087 -
Tpr2g5218 474 SMART c2h2final6 135 162 IPR013087 -
Tpr2g5218 474 SMART c2h2final6 99 129 IPR013087 -
Tpr2g5218 474 Coils Coil 361 409 - -
Tpr2g5218 474 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Tpr2g5218 474 MobiDBLite consensus disorder prediction 1 45 - -
Tpr2g5218 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Tpr2g5218 474 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5218 Tpr-Chr2 58626577 58630806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5218 21 218 C2H2 Transcription Factor Family AT2G01940 79.904 4.81e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g5218 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5218 K25871 - gmx:100785333 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5218 2 58626577 58630806 Tpr2g5218 2 58626577 58630806 ECH