Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5208 ATGGGCAGCCTTGAGTGTGAGAGTAAGAGCATAGAGAAGAGAGAAGAGCAAGAAATTTTAGAGGATGAAGAAGAAAGCTTCTCATATGCTATGCAGCTTGCAGTCTCTGTTGCACTTCCCATGGCACTTCAAGCTGCAATTGAACTTGGTGTATTTGAAGTGTTACAAAATGCTGGTAAAGGTGCTCGACTCTCTGCGGATGACATTGTTTCCTGTCTTTCCAAAATTAACAATCCCGAAGCTTCCAAAATGCTAGATCGCATTCTTGCTTTTCTATCATCTCACTCAGTGCTTAAGTGTTTTATTGCTCCCAATTCCTCTCAGAGATACTACTGCTTGACGCGTGTTGCCGAATTTTTTGCTCCTAATTTCGATGGGTTTTCATTAGGACCCTTGACTGCCTTGAGTACTGATAAGATCATATTAGCTAGCTGGTCCCATCTTAAAGATGCAATTCAGGATGGAGATACACCATTCAACAGGGCTCATGGCAGCCATTTCTTTGATCTTCCCAACTTAGACTCGAGGTTCAATCAAGTTTTTAATAAAGCAATGAGCAATCATACAACTATAGTCATGAAGAAGGTTCTTGAATGCTACAAAGGTTTTAGAGACATAAAAAGACTTGTGGATGTTGGTGGAGGCCTTGGAATAAACATTAATATGATCACTTCAAAATACACTCACATTCAGGGAATCAATTACGACTTGCCTCATGTCATACAACATGCTCCTTCCTATCCTGGAGTGGAGCATATTGGCGGAGATATGTTTGAAAGCGTGCCCAATGGTGATGCCATTTTTATGAAGAATTGTTATGATGCTATTCCTGATGATGGGAAGGTGATAGTTTTGGATGCACTTCTACCTATTATGCCTAAGAATGAAGTGGCTTGGAAATCTATCTCCCAAATGGATATTGCCATGATGAATCTTTTTCCAGAAGGCAAAGAGCGAACTAAGCAAGAATTCATGGATTTGGCAACTAAAGCTGGATTTCGTTGCATCAAATATGAATGTTGTACTTATAATTTATGGGTTATGGAGTTCTTCAAGTAA 1059 0.3975 MGSLECESKSIEKREEQEILEDEEESFSYAMQLAVSVALPMALQAAIELGVFEVLQNAGKGARLSADDIVSCLSKINNPEASKMLDRILAFLSSHSVLKCFIAPNSSQRYYCLTRVAEFFAPNFDGFSLGPLTALSTDKIILASWSHLKDAIQDGDTPFNRAHGSHFFDLPNLDSRFNQVFNKAMSNHTTIVMKKVLECYKGFRDIKRLVDVGGGLGININMITSKYTHIQGINYDLPHVIQHAPSYPGVEHIGGDMFESVPNGDAIFMKNCYDAIPDDGKVIVLDALLPIMPKNEVAWKSISQMDIAMMNLFPEGKERTKQEFMDLATKAGFRCIKYECCTYNLWVMEFFK* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5208 352 PIRSF O-mtase 7 352 IPR016461 GO:0008168
Tpr2g5208 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 350 IPR029063 -
Tpr2g5208 352 Pfam O-methyltransferase domain 145 334 IPR001077 GO:0008171
Tpr2g5208 352 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 20 352 - -
Tpr2g5208 352 Pfam Dimerisation domain 41 92 IPR012967 GO:0046983
Tpr2g5208 352 Gene3D - 6 120 IPR036388 -
Tpr2g5208 352 Gene3D Vaccinia Virus protein VP39 122 352 IPR029063 -
Tpr2g5208 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 352 IPR016461 GO:0008168
Tpr2g5208 352 PANTHER O-METHYLTRANSFERASE 20 352 IPR016461 GO:0008168
Tpr2g5208 352 SUPERFAMILY "Winged helix" DNA-binding domain 22 123 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5208 Tpr-Chr2 58455934 58458578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5208 23 352 Monolignol Biosynthesis Gene Families AT5G54160 46.418 1.36e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5208 K13066 - gmx:100803633 438.343