Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5200 ATGTGTAGTAGAGGTCATTGGAGACCATCTGAGGATGAGAAGCTTAGAGAGTTGGTGGTAAGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAATCTACGAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGACCCAAGGATAAACAGAAGTCCTTTCACGGAGGAAGAAGAAGAACGTCTTATAACTTCTCATCGGATTCATGGTAATAGATGGGCTGTAATCGCAAGACACTTCCCCGGACGTACCGATAACGCGGTAAAGAATCATTGGCATGTAATGATGGCGAGAATGCGCCGAGAAAGGTATAAGATCTATGCAAAAGGTCCTCTTGATCATCACATAATTTTCTCTCCAAATGGTCATCAACCAAACTTTGAGAGAACAAATCTCAATTCTTTTGTTGAGAAGTATCACGAAAAGCCTACTTACCCTTGTGTCTCACTTAGCCCTTTCAAATTTCCCAAGTTTCACTTTCAAGATCCAAGTTCTTGTTCCACAATGCTTCAAGATAAAACTCAAACTCAATCAGTTGAGTTCTATGATTTTCTTCAAGTGGATTCCAATAAAAGTGAAGTAACCGATAATGCTAGAAAAGATGATGAAGAAGTCAATCAAGATGTTGTGAAACTGCAGAACAACGAAAACAATGTTCCATTCATTGATTTTTTGTCTACTGGAAAGTGCTAA 708 0.3927 MCSRGHWRPSEDEKLRELVVSYGPHNWNAIAENLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLITSHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARMRRERYKIYAKGPLDHHIIFSPNGHQPNFERTNLNSFVEKYHEKPTYPCVSLSPFKFPKFHFQDPSSCSTMLQDKTQTQSVEFYDFLQVDSNKSEVTDNARKDDEEVNQDVVKLQNNENNVPFIDFLSTGKC* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5200 235 Gene3D - 4 55 - -
Tpr2g5200 235 Pfam Myb-like DNA-binding domain 4 50 IPR001005 -
Tpr2g5200 235 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Tpr2g5200 235 PANTHER MYB PROTEIN-RELATED 1 233 - -
Tpr2g5200 235 Gene3D - 57 120 - -
Tpr2g5200 235 CDD SANT 7 48 IPR001005 -
Tpr2g5200 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Tpr2g5200 235 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Tpr2g5200 235 PANTHER MYB-RELATED PROTEIN A-LIKE 1 233 - -
Tpr2g5200 235 SMART sant 55 103 IPR001005 -
Tpr2g5200 235 SMART sant 3 52 IPR001005 -
Tpr2g5200 235 CDD SANT 58 101 IPR001005 -
Tpr2g5200 235 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Tpr2g5200 235 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Tpr2g5200 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5200 Tpr-Chr2 58325133 58329958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5200 1 233 MYB Transcription Factor Family AT1G17950 55.422 1.06e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g5200 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5200 K09422 - gmx:100811746 340.502