Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5196 ATGGTGATCTCATCAACTGTCACACACCCAGATGAACAAAGACAGAGCATAACATGTACTTTTGCTTCAAGATACATGCGTGACCCTGTTCCAAAGTTCAAGTTACCAGAGAGTTCTATACCAAAAGATGCAGCATATCAGATAATAAATGATGAGTTAATGTTAGATGGAAAACCAAGGCTTAATTTGGCTTCATTTGTGACTACTTGGATGGAACCTGAGTGTGATAAGCTTATCATGGATTCACTTAATAAGAACTATGTTGATATGGATGAGTACCCTGTCACTACTGAGCTTCAGAACCGATGTGTGAATATAATAGCACATCTATTCCATGCTCCGATTGGTGAAGAGGAAACTGCCGTAGGTGTTGGAACCGTAGGGTCATCCGAGGCAATAATGTTAGCTGGTTTAGCTTTTAAAAGAAAATGGCAGACAAAAAGAAAAGCAGAAGGCAAACCTTATGATAAACCCAACATAGTTACTGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCTAGGTACTTTGAGGTTGAGCTAAAGGAAGTGAAACTCACAGAAGATTACTATGTGATGGATCCATTGAAAGCAGTTGAAATGGTAGATGAGAACACCATCTGTGTTGCCGCCATTTTGGGTTCAACTCTGACCGGAGAGTTTGAGGACGTGAAGCTTCTTAACGAACTTCTTACTATAAAGAACAAGGAAACAGGATGGGATACACCAATTCATGTAGATGCTGCCAGTGGAGGGTTTGTTGCTCCATTTCTCTACCCTGATCTCCAATGGGATTTTCGTTTACAGTGGGTGAAGAGTATCAATGTTAGCGGTCATAAGTACGGTCTTGTTTACCCTGGTATCGGTTGGGTTGTCTGGAGGAATAAAGATGACTTGCCGGATGATCTTGTTTTTCATATCAATTATCTTGGATCTGATCAGCCAACTTTCACATTGAATTTCTCCAAAGGATCGAGTCAAATCATTGCTCAATACTACCAATTTATTCGACTTGGTTTTGAGGGATACAAAAATGTGATGGAAAATTGCTTGGAGAACACAAGAGTTTTGAAGGAAGGAATTGAGAAAACAGGAAGGTTTAAAATCGTCTCCAAAGATATAGGTGTACCACTTGTAGCCTTCTCTTTGAAAGACAGTAGCCAACACACAGTCTTCGAAATAGCCGACCATTTGAGAAAATACGGGTGGATAGTTCCGGCCTATACAATGCCAGCGGACGCACAACACATCGCGGTCCTCCGAGTGGTGATTAGGGAGGATTTCAGCTGTAGCCTGGCTGAGAGACTTGTTTCTGACATTGTCAAAGTTGTGAATCACTTGGATACACTTCCAAGTGCTCTCTCCTCGAAAAGTGCTCATGTGGCGGTTATCGCGAGTGAGACAAGTAAGGAAGTTAAGAAAGATATTACAGAGACTCAAGCTGAGATTGCTAGGTATTGGAAGAAGCTTGTGGATGGCAAGAGAGTTGGAGCATGCTAG 1500 0.4167 MVISSTVTHPDEQRQSITCTFASRYMRDPVPKFKLPESSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFHAPIGEEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEDYYVMDPLKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTIKNKETGWDTPIHVDAASGGFVAPFLYPDLQWDFRLQWVKSINVSGHKYGLVYPGIGWVVWRNKDDLPDDLVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCLENTRVLKEGIEKTGRFKIVSKDIGVPLVAFSLKDSSQHTVFEIADHLRKYGWIVPAYTMPADAQHIAVLRVVIREDFSCSLAERLVSDIVKVVNHLDTLPSALSSKSAHVAVIASETSKEVKKDITETQAEIARYWKKLVDGKRVGAC* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5196 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Tpr2g5196 499 Gene3D - 69 363 IPR015421 GO:0003824
Tpr2g5196 499 PANTHER GLUTAMATE DECARBOXYLASE 2 499 - -
Tpr2g5196 499 SUPERFAMILY PLP-dependent transferases 9 447 IPR015424 -
Tpr2g5196 499 Gene3D - 364 451 - -
Tpr2g5196 499 Gene3D - 1 68 - -
Tpr2g5196 499 PANTHER GLUTAMATE DECARBOXYLASE 2 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Tpr2g5196 499 CDD DOPA_deC_like 62 442 - -
Tpr2g5196 499 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 20 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5196 Tpr-Chr2 58286727 58290600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5196 1 495 Calmodulin-binding Proteins AT2G02010 77.576 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5196 K01580 - gmx:100796475 895.19