Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5181 ATGGAGAATAAGGAACAAGTTGAAGGCACAATTAGTAAGTGCAATTCCAAAGGTGGATCACAGTCTGAGAATGTTGCGAAGACGCAGGATATACCTTCTGTTGCAAACAACCTTACTCCCAAGGTGAGGAAACCATATACTATCACTAAACAAAGGGAGAAATGGACTGATGAAGAGCATCAAAAGTTTCTCGAGGCTTTGAAATTGTATGGTCGAGGCTGGCGTCAAATTGAAGAACATATAGGATCCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGATGGCAGTGCTGAAAGCTCTATTCAGCCAATTGACATACCTCCTCCCCGGCCGAAAAGGAAACCCCTTCATCCATACCCTCGCAAATCAATCGACTCTTTCAAAGGACAGTCGGCCCCGAATGAATCAGAAACATCTCCATCCATTAACCTGTCAGTTGCAGAAAACGATACCCAATCTCCCACCTCCGTACTATCTGCACATGGTTCTGAAGCATTTGGCTCAGCAGCATTTTCTGAGCAAACTAATAGATGTCTTTCTCCAAATTCTTGCACCACTGAGATTCACCCGGTCAGCTTGTCACCTGTTGAAAAAGAAAATGATAGCCAGACATCCAAACCTTCTGAGGAGGAAGAGAAAGGGTCTCCAGCTTTGGTTCCTTTATCAACCGACTCAAAACCACTTATGTGCTTGAAGTCCGAGATGATTTCTTCAGAGGAAACACAACGTTTCAGAGAAGATGCTGCAAATATGCCACACATCACTTGTATTAAGCTGTTTGGTAGAACAGTCTCTATGGTAGGTACTGAGAAGTCAATAAATGATGATGATGAAAATATTAAGCCAATAGCTATGAAATCTGATGAAATTGTTGAGAACGAAAAGGTTGGCCAAGAAGCGATATCAGAGCAGCTAGATACACAATTATCACTAAGCACGTGTAGTGCTAATTTGCATATAATACCTGATGAAGCTCAAATGAGAAGCACGGAACAACCGAAGGATAATCTATACGTCGGCGGCGCAGCATCTTTACCATTGTGGAGTTTGTACCAAGGCCTTCCATCTTTCAACCTCAAGCCATGCAATCATGAGATTATAAATCCTGTGCCTCTTAGACCCTCTTTGAAGATAAGAACAAGAGAAGAGGAAAGTTCTTGCACTGGTTCAAATACTGAATCAGTCTGTGATATGGAAAATCAAAGCAAGAACAACTCATCGGATACGGATGATTCTCAAAGTCAAAAACATCATCAAGAAGGAGTAGTAATTAAGAAATCTGGAAGAGGATTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGAAAATTCTTTAATTGTTGGCTTAGAAGAAAGAGAAGGACAAAGAGCTCGTGTGTGTTCATAG 1422 0.4128 MENKEQVEGTISKCNSKGGSQSENVAKTQDIPSVANNLTPKVRKPYTITKQREKWTDEEHQKFLEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESSIQPIDIPPPRPKRKPLHPYPRKSIDSFKGQSAPNESETSPSINLSVAENDTQSPTSVLSAHGSEAFGSAAFSEQTNRCLSPNSCTTEIHPVSLSPVEKENDSQTSKPSEEEEKGSPALVPLSTDSKPLMCLKSEMISSEETQRFREDAANMPHITCIKLFGRTVSMVGTEKSINDDDENIKPIAMKSDEIVENEKVGQEAISEQLDTQLSLSTCSANLHIIPDEAQMRSTEQPKDNLYVGGAASLPLWSLYQGLPSFNLKPCNHEIINPVPLRPSLKIRTREEESSCTGSNTESVCDMENQSKNNSSDTDDSQSQKHHQEGVVIKKSGRGFVPYKRCLAERDENSLIVGLEEREGQRARVCS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5181 473 MobiDBLite consensus disorder prediction 8 39 - -
Tpr2g5181 473 SMART sant 51 99 IPR001005 -
Tpr2g5181 473 MobiDBLite consensus disorder prediction 100 170 - -
Tpr2g5181 473 PANTHER SWI/SNF COMPLEX-RELATED 4 460 - -
Tpr2g5181 473 MobiDBLite consensus disorder prediction 200 235 - -
Tpr2g5181 473 MobiDBLite consensus disorder prediction 138 170 - -
Tpr2g5181 473 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 50 99 IPR006447 GO:0003677
Tpr2g5181 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 101 IPR017930 -
Tpr2g5181 473 ProSiteProfiles SANT domain profile. 50 101 IPR017884 -
Tpr2g5181 473 MobiDBLite consensus disorder prediction 391 435 - -
Tpr2g5181 473 MobiDBLite consensus disorder prediction 398 420 - -
Tpr2g5181 473 Gene3D - 54 101 - -
Tpr2g5181 473 MobiDBLite consensus disorder prediction 421 435 - -
Tpr2g5181 473 Pfam Myb-like DNA-binding domain 52 95 IPR001005 -
Tpr2g5181 473 CDD SANT 54 97 IPR001005 -
Tpr2g5181 473 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Tpr2g5181 473 MobiDBLite consensus disorder prediction 1 39 - -
Tpr2g5181 473 SUPERFAMILY Homeodomain-like 46 100 IPR009057 -
Tpr2g5181 473 PANTHER PROTEIN REVEILLE 7-RELATED 4 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5181 Tpr-Chr2 58066180 58070314 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr2g5181 Myb_DNA-binding 9.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5181 - - gmx:778089 595.89