Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g5180 | ATGGTTACTCCTGCTACTGCTATGGCTAACATTGATGTTGGAGTTTCTCTTCCTCTACTTTCATTAACCTCAACAAACTCAAACACTTTCACTCTTAACTCCAAAATTAAGACCCAAAAACATAAACTTTATCTAAATTTCTTCCAAACAAATCACACAACAACCTCATTTTCGTCTTCCTTATCATCATCACATAGAAACAAAAGTAGTAGTTGTCCTGTGTTGGCTTGTCTTCCTCCTGCTTCTGAATCCTCATTCTCATCTTCATCTTCCAATACTACACCTTCTACTAGTTCTCCTTCAACTAAGCTATATATCAGTGGGCTATCGTTTCGTACAACTGAAGAGAGCTTGCGAAATGCATTTAAAATTTTTGGTCAACTTGCTAAAGTCAATCTTGTGATGGATAAAGTTGCAAATAGACCAAGAGGGTTTGCTTTCCTTCGTTATGAAACCGAAGAAGAATCGAAGAAAGCTATTGAAGGAATGCATGGAAAGTTCCTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAGAGCTACGGCAGAAATTGAAGCAAAACACTATGTAG | 582 | 0.378 | MVTPATAMANIDVGVSLPLLSLTSTNSNTFTLNSKIKTQKHKLYLNFFQTNHTTTSFSSSLSSSHRNKSSSCPVLACLPPASESSFSSSSSNTTPSTSSPSTKLYISGLSFRTTEESLRNAFKIFGQLAKVNLVMDKVANRPRGFAFLRYETEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQKLKQNTM* | 194 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g5180 | 193 | SMART | rrm2_1 | 103 | 176 | IPR003954 | GO:0003676 | |
Tpr2g5180 | 193 | PANTHER | RNA-BINDING PROTEIN 1 | 28 | 191 | - | - | |
Tpr2g5180 | 193 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 104 | 173 | IPR000504 | GO:0003723 | |
Tpr2g5180 | 193 | Gene3D | - | 49 | 192 | IPR012677 | - | |
Tpr2g5180 | 193 | PANTHER | TRANSFORMER-2-RELATED | 28 | 191 | - | - | |
Tpr2g5180 | 193 | SUPERFAMILY | RNA-binding domain, RBD | 91 | 187 | IPR035979 | GO:0003676 | |
Tpr2g5180 | 193 | SMART | rrm1_1 | 103 | 176 | IPR000504 | GO:0003723 | |
Tpr2g5180 | 193 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 102 | 180 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g5180 | Tpr-Chr2 | 58055060 | 58064370 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g5180 | 102 | 191 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.787 | 5.49e-10 | 56.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g5180 | - | K13195 | gmx:100305561 | 188.734 |