Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5180 ATGGTTACTCCTGCTACTGCTATGGCTAACATTGATGTTGGAGTTTCTCTTCCTCTACTTTCATTAACCTCAACAAACTCAAACACTTTCACTCTTAACTCCAAAATTAAGACCCAAAAACATAAACTTTATCTAAATTTCTTCCAAACAAATCACACAACAACCTCATTTTCGTCTTCCTTATCATCATCACATAGAAACAAAAGTAGTAGTTGTCCTGTGTTGGCTTGTCTTCCTCCTGCTTCTGAATCCTCATTCTCATCTTCATCTTCCAATACTACACCTTCTACTAGTTCTCCTTCAACTAAGCTATATATCAGTGGGCTATCGTTTCGTACAACTGAAGAGAGCTTGCGAAATGCATTTAAAATTTTTGGTCAACTTGCTAAAGTCAATCTTGTGATGGATAAAGTTGCAAATAGACCAAGAGGGTTTGCTTTCCTTCGTTATGAAACCGAAGAAGAATCGAAGAAAGCTATTGAAGGAATGCATGGAAAGTTCCTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAGAGCTACGGCAGAAATTGAAGCAAAACACTATGTAG 582 0.378 MVTPATAMANIDVGVSLPLLSLTSTNSNTFTLNSKIKTQKHKLYLNFFQTNHTTTSFSSSLSSSHRNKSSSCPVLACLPPASESSFSSSSSNTTPSTSSPSTKLYISGLSFRTTEESLRNAFKIFGQLAKVNLVMDKVANRPRGFAFLRYETEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQKLKQNTM* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5180 193 SMART rrm2_1 103 176 IPR003954 GO:0003676
Tpr2g5180 193 PANTHER RNA-BINDING PROTEIN 1 28 191 - -
Tpr2g5180 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 173 IPR000504 GO:0003723
Tpr2g5180 193 Gene3D - 49 192 IPR012677 -
Tpr2g5180 193 PANTHER TRANSFORMER-2-RELATED 28 191 - -
Tpr2g5180 193 SUPERFAMILY RNA-binding domain, RBD 91 187 IPR035979 GO:0003676
Tpr2g5180 193 SMART rrm1_1 103 176 IPR000504 GO:0003723
Tpr2g5180 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5180 Tpr-Chr2 58055060 58064370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5180 102 191 Eukaryotic Initiation Factors Gene Family AT4G34110 29.787 5.49e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5180 - K13195 gmx:100305561 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5180 2 58055060 58064370 Tpr2g5180 2 58055060 58064370 ECH