Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5178 ATGTCACCAGTTGGATTACCACCAGGTTTCAGGTTTCATCCAACTGATGAAGAGCTTGTCAATTATTATCTAAAGAGGAAAATCAATGGTCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTTTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTACCAAGTAGAGATCCAGAGTGGTACTTTTTCGGACCGCGGGACAGAAAATACCCTAATGGATTCAGAACAAATAGAGCAACTAGAGCAGGATATTGGAAATCTACTGGAAAAGACAGAAGAGTTTCATCCCAAAGTAGACCTATTGGTATGAAGAAGACTTTGGTTTACTATAGAGGCAGAGCTCCTCAAGGAATTAGAACTGATTGGGTCATGCATGAGTATCGTCTTGATGATAAAGAGTGTGAGGACAACTCTGGAGGATTACAGGATACTTACGCATTGTGTCGCGTGTTCAAGAAAAATGGAATCTGTTCTGATATGGAAGAGCAACAAGCGCAATGTAGTATGTCGTCGCTAATCGAATGTTCTCAAACCATAATCAACGAGTGTGAAACGATGTCTCCGGACATACTAGGAGCATCATCTTCATGCTTAGAAGAGGAAGACAAAGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCAACAATGGTTGGTTGTGAAGAAGTTTCACATGCTACATTTACAAACTAA 726 0.3912 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSSQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNSGGLQDTYALCRVFKKNGICSDMEEQQAQCSMSSLIECSQTIINECETMSPDILGASSSCLEEEDKDDSWMQFITEDAWYSSNAATMVGCEEVSHATFTN* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5178 241 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Tpr2g5178 241 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 241 - -
Tpr2g5178 241 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Tpr2g5178 241 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Tpr2g5178 241 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 241 - -
Tpr2g5178 241 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5178 Tpr-Chr2 58041295 58046287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5178 1 228 NAC Transcription Factor Family AT3G17730 78.008 1.22e-132 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr2g5178 NAM 5.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5178 - - gmx:100788036 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5178 2 58041295 58046287 Tpr2g5178 2 58041295 58046287 ECH