Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5167 ATGAACGGGAAGGCTTCCGTTTCTAAGGAGCTTCATGCGAAACACACCAAGATCTTAGAGGGACTTCTTAAGCTACCTGACAACAGGGAATGTGCAGATTGTGGGACCAAGGCACCACGATGGGCTAGTGTGAACTTAGGAATTTTCATTTGCATGCAATGTTCAGGGATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGAGGTCCACAACTTTGGATACATGGTTGCCAGAACAAGTTTCTTTTATGCAATATACGGGTAATGTGAAGTCAAATAAGCATTGGGAAGCTAAACTACCACCAAATTTTGACAGAAATGGATATGGAATCGAGAAGTTTATCCGTGCCAAATATGTGGAGAAACGATGGGCTTTACAAGGTGAACTACAAGCTACAAAGTCAGCTGAAATAAAGTTGAACTTGAACTTCAAAATTTCACCACCTACTGGGGCCAAGAATGGTATTCAAAAACCTAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAATCACATGGCACAAATTCGGCCTCCAATACCAAAATTTAATGAGGGTCCCTTAGATTTAAAAATGAAGAATTCACCACCAATAAAGAGGCCATCAGCATCACTTGATTTTGATAAACCCATTGGAAATAGCAACGGTACCGTCGATCTTTTTAACTTGCTTTCCTTCGACAACGATAAAAAGAATATATCAACTACACCTTCTAGCTGGACAACATTTGATTGA 735 0.4041 MNGKASVSKELHAKHTKILEGLLKLPDNRECADCGTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVSFMQYTGNVKSNKHWEAKLPPNFDRNGYGIEKFIRAKYVEKRWALQGELQATKSAEIKLNLNFKISPPTGAKNGIQKPRRLSLEESILVNHMAQIRPPIPKFNEGPLDLKMKNSPPIKRPSASLDFDKPIGNSNGTVDLFNLLSFDNDKKNISTTPSSWTTFD* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5167 244 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 244 IPR044520 GO:0005096
Tpr2g5167 244 Pfam Putative GTPase activating protein for Arf 17 126 IPR001164 GO:0005096
Tpr2g5167 244 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Tpr2g5167 244 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Tpr2g5167 244 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 244 - -
Tpr2g5167 244 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Tpr2g5167 244 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Tpr2g5167 244 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Tpr2g5167 244 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Tpr2g5167 244 CDD ArfGap 19 119 - -
Tpr2g5167 244 SMART arf_gap_3 5 132 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5167 Tpr-Chr2 57816929 57820394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5167 19 119 C2H2 Transcription Factor Family AT4G05330 52.336 7.01e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5167 K12486 - gmx:100802691 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5167 2 57816929 57820394 Tpr2g5167 2 57816929 57820394 ECH