Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5163 ATGTCTTCTACCGGCGGCGACGAAAATCCTCCTACCGTCGGTAACTCCGATGAACTTCGCCGTTACTTTTGCCACCAGTGCGAACGCACAGCTTTCATTTCCACTACATCCACCGATCTAATCTGTCCCAATTGCAACGGTACTTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAATCCCAATCCTCTCCCTCCTTTCTTCTCCCACACCACAACCGATTTCCCCGCCGCAGGATTCTCCTTTCCCCTCATTTTCTCCGGTGCCGGCGCCGCCAATGCTTCTCAACCGTTCAATGATCTCTCCGCTTTATTATCGTCTCCAGCACCGCCTTCACCTTTCGGTGAAGCGTTTAACCCTGTCGCGTTTATTCAAAACTACCTCCGCAACATGAATGCCGGAGGAGGCAACGTTCAGTTCTTCATCAACGATGCTGACGATCCGGCGAGACAGTTCCGGTTTCCCGGAAACGCTAATCCAGGAGATTATTTCTTTGGACCTGGACTTGAGGATCTGATCCAGCAATTAGCAGAGAACGATCCTAATCGGCGAGGGACACCGCCGGCGTCGAAGTCCGCTGTGGAAAAGCTTCCGGTTATTGAAGTTACGGAGGAGCTGCTGGAATCGGATTCATCGCAGTGCGCGGTGTGTAAAGACACATTTGCCCTTGGCGAAAAGGCAAAGCAGATGCCGTGTAAGCATATATATCATACTGATTGTATCTTGCCGTGGTTGGAATTGCATAATTCGTGTCCTGTTTGTCGTCATGAGTTGCCTACAGATGATCCTGATTATGAGCAGAGGGCTCATGGTGGTGGCGGAGGCGGTGCTGGTGGTGGAGGAGGAGGAGATGATTCAGTGAGAACAAGGTTTAGGGTGTCTTTGCCATTTATGCCGTTTAGGCATGTACCTTCTTCTTCTGGAGCTGCTGCAGGGACAAGTAATGTTGGGAATGTTAATAACAATGATAGCAACAATAGCAATAGTGGAAATAATAATGAGCAATCCAATACCGAAAATAGGGGAAATCAGAATTTTGAGTCAGGGACTAGACAAGAAGATCTTGACTGA 1074 0.4898 MSSTGGDENPPTVGNSDELRRYFCHQCERTAFISTTSTDLICPNCNGTFLEELETPIPNPNPNPLPPFFSHTTTDFPAAGFSFPLIFSGAGAANASQPFNDLSALLSSPAPPSPFGEAFNPVAFIQNYLRNMNAGGGNVQFFINDADDPARQFRFPGNANPGDYFFGPGLEDLIQQLAENDPNRRGTPPASKSAVEKLPVIEVTEELLESDSSQCAVCKDTFALGEKAKQMPCKHIYHTDCILPWLELHNSCPVCRHELPTDDPDYEQRAHGGGGGGAGGGGGGDDSVRTRFRVSLPFMPFRHVPSSSGAAAGTSNVGNVNNNDSNNSNSGNNNEQSNTENRGNQNFESGTRQEDLD* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5163 357 MobiDBLite consensus disorder prediction 303 357 - -
Tpr2g5163 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 14 301 - -
Tpr2g5163 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 301 - -
Tpr2g5163 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 262 IPR013083 -
Tpr2g5163 357 MobiDBLite consensus disorder prediction 265 289 - -
Tpr2g5163 357 MobiDBLite consensus disorder prediction 308 351 - -
Tpr2g5163 357 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Tpr2g5163 357 SMART ring_2 215 255 IPR001841 -
Tpr2g5163 357 Pfam zinc-ribbon 21 53 IPR039525 GO:0061630
Tpr2g5163 357 Pfam Ring finger domain 214 256 IPR001841 -
Tpr2g5163 357 CDD RING-H2_RNF126_like 214 256 - -
Tpr2g5163 357 SUPERFAMILY RING/U-box 195 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5163 Tpr-Chr2 57754618 57763064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5163 156 268 C3H Transcription Factor Family AT5G01980 51.327 1.00e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5163 - K11982 mtr:MTR_6g079660 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5163 2 57754618 57763064 Tpr2g5163 2 57754618 57763064 ECH