Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5084 ATGGATCCAAAAGTGTGTAATGAATCAGTGAAGAACGATGCTTCAGATTTCAAGCACGAGAAGATTCTACACACAGTTGATAAATCAATTGCATGTCCCACTCCAGATAAGAAGACTGAACAATTACCCATCAAATTCAAGCATCCCAAAACCCAGCTTCCAGAAAAGTACAAGACCATTGCTGATTTGTTTAGTCATATGAGTTGTGCACTTAGATTGCTGCATCTGCGGAAAAAGTCTCCAACTTTTCAAAATATTTGCAACAAGGTTGAAATTCTTGCCAAAAGAAATTTCTCCTATGCTCATCTAGCGCAGATGAAGTATATACTTCCTGAAGGTATAGAAATTGAAAAGGTGGTTGTTGTTGAAAAGAGGAGCTTGTGTATGAAGCCGGATTTGAAGATCACCTTAGTATTTGAAGTTCTAGATGATCACTCTGAACAGTCTGCTTATATGGCTCTTGGACGATATTTTAATTCCAGGCTGATTAATTTTTTTAATCAGCATCCCGAGGGTACTGATATTCCAGAAGCCACACTACCAGAGCCCTTTAGCCAGAAAGCTTGTAACTTGATTTTCAAAGATGGACCTGTAAATCTGTCAACGGAACTTTCATCGACTTGCAGTGAAGTTGAACTGTCGCTAAACAACTTACATTTGAGTCCATCTTTTAGAAGACATTTTTCTCAGAAGAATGTTACTGACCAGACTGAGCAAGTTCAGTACTTTTCAACATCTAAAAACTCGCTGTCATCCCATGAATCCGACTGCCTAGACAACCAAGAAAGTGAAAGCACATGGCAGAAAGAACGTACACAATTGTCTGATTGTGTCAGTAATCTTAATGCAGAAAAAGGCAAGCAGAAGGAATCACACTCAATGTGTTTTCAACCAAATGTTATTAATACACCAGTACATAAGATCTCCCCTCCATGTTCTGAAAGCCCTGATTGGAAAATTGTCTCCGGTACTGATAGTTTGTTGACACAAACACCTGCACTGTCAGCACCTGAGAGATTGGTGCTTGGTTCTGATGTTAAGCTTCAAAAAATGACTGGTCAAAAGTCTACTTCCTGTTTTAAGCCTGCAAAAAGAGTGCTTGACTTTTCACTCACAGAAGGCAGTGATGATTTGGACAATAGAGTAGACATGTCAAAACCTAGCCGAGGATGTTCTGAGGATTTCAAATCTTTTGATTCTGCTTCCCTACTTCAGGAGGTACAAGAGAACCTATATATTGGTTTGGATGCATCAGATGACAATTCTTCATCATTGGTGGAACTGGTTAATGTGATTGACTCTATATTTAGTTCTGTCAAAAGAACTTCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATGATGAACTGTTTAGATTTTGTCGAGATTAGCGAAGCTGAAGAGCAGATCGAGATTTTGGAAAAGATTGTACCGGATTGGATTTGCAAGAAGTTGGTTTCTTCTGGAGACACTATGTACTGCGTCAAGAATGCGGTAGATTTGGAGTCAGTTCGATCAAGACTTCTCAGTAATGTGACCAAAGGAGATGAGTGA 1554 0.3919 MDPKVCNESVKNDASDFKHEKILHTVDKSIACPTPDKKTEQLPIKFKHPKTQLPEKYKTIADLFSHMSCALRLLHLRKKSPTFQNICNKVEILAKRNFSYAHLAQMKYILPEGIEIEKVVVVEKRSLCMKPDLKITLVFEVLDDHSEQSAYMALGRYFNSRLINFFNQHPEGTDIPEATLPEPFSQKACNLIFKDGPVNLSTELSSTCSEVELSLNNLHLSPSFRRHFSQKNVTDQTEQVQYFSTSKNSLSSHESDCLDNQESESTWQKERTQLSDCVSNLNAEKGKQKESHSMCFQPNVINTPVHKISPPCSESPDWKIVSGTDSLLTQTPALSAPERLVLGSDVKLQKMTGQKSTSCFKPAKRVLDFSLTEGSDDLDNRVDMSKPSRGCSEDFKSFDSASLLQEVQENLYIGLDASDDNSSSLVELVNVIDSIFSSVKRTSITKEELLQKIMMNCLDFVEISEAEEQIEILEKIVPDWICKKLVSSGDTMYCVKNAVDLESVRSRLLSNVTKGDE* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5084 517 Gene3D - 417 515 IPR038090 -
Tpr2g5084 517 Pfam DNA replication factor Cdt1 C-terminal domain 421 481 IPR032054 -
Tpr2g5084 517 Pfam DNA replication factor CDT1 like 53 119 IPR014939 -
Tpr2g5084 517 PANTHER EXPRESSED PROTEIN 4 510 - -
Tpr2g5084 517 SUPERFAMILY "Winged helix" DNA-binding domain 46 184 IPR036390 -
Tpr2g5084 517 PANTHER DNA REPLICATION FACTOR CDT1 4 510 IPR045173 GO:0003677|GO:0030174|GO:0071163
Tpr2g5084 517 CDD Cdt1_m 35 183 IPR014939 -
Tpr2g5084 517 SMART CDT1_2 53 182 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5084 Tpr-Chr2 56730866 56734753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5084 296 508 Core DNA Replication Machinery Family AT3G54710 28.458 1.30e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5084 K10727 - gmx:102670055 545.043