Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5065 ATGGCATCATCAACCCCTCAAGTCATAACCTGCAAAGTGGCATGGGGAGCTGGAGAGGCATTGGTAATTGAGGAAGTGGAAGTTAGTCCTCCTCAACCATTGGAGATTAGGATTAAGGTTGTCTCCACCTCTCTCTGTCGTAGTGATCTTTCTGCTTGGGAATCTCATGCCATATTTCCTCGCATATTTGGCCATGAAGCATCTGGGGTTGTTGAGAGTGTAGGGCAAGGAGTGACTGAATTCAAAGAAGGGGACCATGTGTTAACAGTTTTCATTGGAGAATGCATGTCATGCAGGCCGTGCAAATCAGGAAAAAGTAATGTTTGTCAAGTTTTGGGATTGGAAAGAAAGGGTTTAATGCATAGTGATCAAAAGACGAGATTTACAGTAAAAGGGAAGCCTGTTTATCATTATTGTGGTGTTTCAAGTTTTAGTGAATATACCGTCGTCCATTCTGGATGTGCCGTGAAAGTCGGTCCTCATGTACCTCTTGAGAAAATATGCCTTCTTAGCTGTGGTGTTGCTGCAGGTCTAGGTGCAGCATGGAACGTTGCTGATGTGACAAAAGGATCAACAGTGGTTATATTTGGTCTTGGAACTGTTGGCCTTTCTGTTGCTCAAGGCGCCAAACTAAGGGGTGCTTCTAGAATAATTGGTGTTGACAACAATCCACGGAAGTGTGAAAACGCTAAATCTTTTGGGATTACGGAAGTTGTTGATCCGAATTCGTACAAAGAACCTATCGTGCAGGTTATTAAGCGCATTACTGATGGTGGCGCAGATTTCTGTTTTGAATGTGTAGGTGACACTGATATGATAACCACCGCATTGCAATCATGCTGTGATGGATGGGGTTTGACTGTAACACTTGGTGTACCGAAGGTGAAGCCTGAGATGTCAGCTCATTATGGACTATTCCTGACGGGAAGAACATTAAAAGGATCTCTATTCGGAGGATGGAAACCTAAAACTGATCTTCCTTCGTTAGTAGAGAAGTATGTGAACAAGGAAATCCAGATTGATGATTACATAACACACAATTTGCAATTTGATGACATTAACAAAGCTTTCAATCTCATGAAGGAAGGAAAGTGTCTTCGTTGTGTTATCCATATGCCAAGATGA 1125 0.4249 MASSTPQVITCKVAWGAGEALVIEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESHAIFPRIFGHEASGVVESVGQGVTEFKEGDHVLTVFIGECMSCRPCKSGKSNVCQVLGLERKGLMHSDQKTRFTVKGKPVYHYCGVSSFSEYTVVHSGCAVKVGPHVPLEKICLLSCGVAAGLGAAWNVADVTKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPRKCENAKSFGITEVVDPNSYKEPIVQVIKRITDGGADFCFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYGLFLTGRTLKGSLFGGWKPKTDLPSLVEKYVNKEIQIDDYITHNLQFDDINKAFNLMKEGKCLRCVIHMPR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5065 374 Pfam Zinc-binding dehydrogenase 201 322 IPR013149 -
Tpr2g5065 374 SUPERFAMILY GroES-like 323 371 IPR011032 -
Tpr2g5065 374 SUPERFAMILY GroES-like 7 182 IPR011032 -
Tpr2g5065 374 PANTHER ALCOHOL DEHYDROGENASE 5 372 - -
Tpr2g5065 374 Gene3D - 177 315 - -
Tpr2g5065 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 162 336 IPR036291 -
Tpr2g5065 374 Pfam Alcohol dehydrogenase GroES-like domain 35 157 IPR013154 -
Tpr2g5065 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 64 78 IPR002328 GO:0008270|GO:0016491
Tpr2g5065 374 Gene3D - 13 367 - -
Tpr2g5065 374 PANTHER ALCOHOL DEHYDROGENASE-LIKE 6 5 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5065 Tpr-Chr2 56567388 56572563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5065 35 109 Monolignol Biosynthesis Gene Families AT2G21890 39.241 2.39e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5065 K00001 - gmx:100819938 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5065 2 56567388 56572563 Tpr2g5065 2 56567388 56572563 ECH