Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5039 ATGGAGATAGAACCAAGTTATAATAATAATAAATCAACAACATTAGGAAATGAAACATTAGCTACAAATTTACCATCATTGAGTCCATTGAGTGAAACCCTTTGGAGAGAAAAAACAAAAACAGAGTTCATTGGTGATGTATCAGCAAGATTAACATGGGAAGATTTAACTGTTAGGGTAACATTAAGCAATGGTGAAACACAATATGTTTTGGAGAAATTAACTGGTTATGCTGAACCAGGTTATTTTACTGCTCTTATGGGACCTTCTGGTTCTGGAAAATCAACACTTCTTGATGCACTTTCTAGTCGTTTAGCTTCTAATGCTTTTCTAACTGGTACTGTTTATCTTAATGGTCGCAAAGAAAAGTTATCTTTTGGAACTGCTGCTTATGTAACACAAGATGACAACTTAATTGGAACATTAACAGTAAGAGAAACAATTTGGTATTCAGCTAGATTAAGATTACCAGATAAAATGTCAAGATCAGATAAAAGAGCTTTAGTTGAAAGCACAATTGTTGCAATGGGACTTCAAGATTGTGCTGACACAGTTATTGGTAATTGGCATTTACGTGGTATAAGTGGTGGTGAAAAAAGAAGAGTTAGTATTGCATTGGAAATATTAATGAGACCTAGATTGCTTTTTCTTGATGAACCAACTAGTGGACTTGACAGTGCATCAGCTTTCTTTGTGACACAAACACTACGTGCATTGGCAAGGGATGGAAGAACAGTGATAGCTTCAATTCATCAACCTAGCAGTGAAGTGTTTGAACTATTTGACCAATTGTACTTGCTTTCTGGTGGCAAAACTGTTTATTTTGGCCAAGCTTCAGATGCATATGAGTTCTTTGCACAAGCTGGATTTCCATGCCCTGCTCTGAGGAACCCCTCTGATCATTTCCTTAGATGCATCAACTCTGACTTTGATAAAGTCAAAGCCACTCTTAAAGGGTCCATGAAATTAAGGTTTGAAGGAAGTGATGATCCTCTCGACAAGATCACCACTTCTGAAGCTATCAGAACACTTGTAGATTTCTACCGCACTTCTCAACACGCTTACGCTGCAAGACAAAAAGTTGACGAGATGTCCAAAGTTAGAGGGACAGTGCTTGAAGCAGGAGGAAGTGAAGCTAGTTTCTTGATGCAATGTTACATATTAACCAAACGTTCATTCATTAACATGTCAAGGGACTTTGGTTACTATTGGCTTAGGCTTGTAATCTACATTGTTGTCACTATATGCATTGGAACAATTTACTTGAATGTTGGGACTGGCTATAACTCAATTCTGGCTAGAGGTTCATGTGCATCTTTTGTTTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTTCCTTCATTTGTTGAAGATATGAAGGTTTTCCAAAGGGAGAGGCTAAATGGACACTATGGTGTGACTGCATTTGTTATAAGCAACACATTATCAGCAACACCATTTCTGATATTAATCACTTTTCTGTCTGGAACAATTTGTTACTTCATGGTTCAACTACACCCTGGCTTTTCACATTATGTTTTCTTTGTGCTTTGCCTTTATGCAAGTGTCACTGTTGTTGAAAGCTTAATGATGGCAATTGCTAGTATTGTTCCTAACTTCCTCATGGGAATTATCATTGGAGCAGGAATTCAAGGAATATTCATGTTGGTCTCTGGCTACTTTAGGCTCCCACATGATATCCCAAAACCTGTTTGGCGCTATCCAATGTCATACATCAGTTTCCACTTTTGGGCTTTACAGGGTCAATACCAAAACGATCTAAAGGGTTTGGTATTCGACAACCAAACACCAGATCTACCTAAGATACCAGGCGAATACATCTTGGAGAACGTGTTCCAAATCACTGTGAGCAGATCAAAATGGATAGATTTAATCGTGATCTTAAGCATGATCGTCATATACCGCATTATTTTCTTCATCATGATCAAAATCAATGAGGATGTTACTCCTTGGGTTAGAGGCAAGCTTGCTAAAAGAAGAATGCAAAAAAAAAATGGAGGCGATGACGAATCTTGA 2040 0.377 MEIEPSYNNNKSTTLGNETLATNLPSLSPLSETLWREKTKTEFIGDVSARLTWEDLTVRVTLSNGETQYVLEKLTGYAEPGYFTALMGPSGSGKSTLLDALSSRLASNAFLTGTVYLNGRKEKLSFGTAAYVTQDDNLIGTLTVRETIWYSARLRLPDKMSRSDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDKITTSEAIRTLVDFYRTSQHAYAARQKVDEMSKVRGTVLEAGGSEASFLMQCYILTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSATPFLILITFLSGTICYFMVQLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLVFDNQTPDLPKIPGEYILENVFQITVSRSKWIDLIVILSMIVIYRIIFFIMIKINEDVTPWVRGKLAKRRMQKKNGGDDES* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5039 679 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524
Tpr2g5039 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 25 673 - -
Tpr2g5039 679 MobiDBLite consensus disorder prediction 1 20 - -
Tpr2g5039 679 Pfam ABC transporter 73 222 IPR003439 GO:0005524
Tpr2g5039 679 SMART AAA_5 80 251 IPR003593 -
Tpr2g5039 679 Gene3D - 42 289 IPR027417 -
Tpr2g5039 679 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 51 294 IPR003439 GO:0005524
Tpr2g5039 679 Pfam ABC-2 type transporter 251 307 IPR043926 GO:0140359
Tpr2g5039 679 CDD ABCG_EPDR 48 276 - -
Tpr2g5039 679 PANTHER OS04G0528300 PROTEIN 25 673 - -
Tpr2g5039 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 287 IPR027417 -
Tpr2g5039 679 Pfam ABC-2 type transporter 384 590 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5039 Tpr-Chr2 56225683 56235092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5039 81 255 Calmodulin-binding Proteins AT2G36910 33.333 9.57e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5039 K05681 - gmx:100803731 1181.78