Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5023 ATGGGGTCGTGTGGTGAACCTGCAATTGTTGGTGATCCACCTGGTTTGTCTGTAATGGAGCAGCCTTTGAGCTCGGGGTTTGCGGCAGAGTTAGATTCTGTGCAGGAGTTGTGTTCAGAGGAAGCTTGTAATGGTATGGTTGATGGTTCTTTGGAAGAGGCTCATGTGGGTTGTTCTGTTAGCTTTGTTGATGTTGCCGAGGGGTCGTGTGATGCTTTGAAAAAAGAATGTGAAAATGGTGATGTGTTAAAATTGGAGAAAACTGTTGAAGATGATTGTGGGAATAGTTTGGGGATTTGTTCGGAGGACATTGGAGTGTCTGATCTTAGAAGTGGTGAATTGTGCTCAGAAGGATATTTTCAAGATGATGGCTATGTTGACTTTCCGTTGGAGTCAATAACCTCAAATAATTTGCAGAACCATTGTGCTGAACAGGGTGAGCAGAAGGATATCATTGAAGTTTCTAATCTTAAAAGTGGTAGATTGTGCTCGGAAGGAAATTTTCAAGATGGACACTACGTTGACCTTCCGTTGGAGTCAATAACCTCAAATAATTTGCAGAAACATTATGCTGAACAGGGTGAGCAGAAGGATGTCAAGAGCACAATTTTTTCCTCTGCGGGAGATGATGCCGAAGTTCTGGAAGGTAACAACGATGGTGCTGATTTGCTAGCAGGTGCTGTCAACTGTGTGTTTGATGCAAGACATTCTGAAGTGTGTTTGGAATCAGATTTCGTGACAGGTTTGCTAGTTGATTACAACCAGGAAAATGAGCCAGAGGAGATCATGAGAAATGCAGATAGCTTGCCAAGGGTTGTAGAAAAGTGTGATGCTTTAGATGGGATGGACGCCAATTCTAGCAGGCAGATATCTCCTTCACTGGATATGGAAGTGCCGTCAGGTGCCTTGTATATAGATACAAAAGTAGAGAGCACAAGTGATATGCTACATGACCAGAAAAATGGCGAGGATTGTGACAGTACTCATGAAGAAAAGATAAGAACCGATGTTGAAGAAGAAATCACTATTAATTCATATGTACAAGCAAATTCCTCACCAGATTTCCAAAGGACCTTGAAGACTTCACCTGTAGTTGATTCACTATGTCAGCCTACCTTGCTGGATCCAGGGAGTGAATTGCAGAATGGCATATTGCAAATAGAAGATAATTTTTGTATATTGAAGGATTGTTCTGCAGATGGAACTGCCAACTCTACCATTAGAAAACCTTTTTATCCAGAATCAGGTCACTCCTCTCTTGTTTTAATCACCAACAGCTCTCCAAAGGTTTTGCCGGATCTCCTTTGCAACGGTGACAGTGTTTCCATCAACAATAATTGTGCTGTAGACAATCCTGGACAGACAAATAATGATGGGAAAGAAGCTGTTGAAGTTGATTGTATCACTGAAAGCATACTGTTACCTTCTCAAAGGAGCAGTCAGAGAACCAAATTTGGTCGCAAGACACCAACCAGAAAGTCTTCTAGAAAATCTAAGAACAAACCCAGTGTGACACATCCGGGTGGGGGTATGATGATTAACTTAGAGACTGCTAGAAAGAAAAGAAGTTGTTTATCCAAACCAGCTCGTTCTTCTGTCTGGGGATTGCTTGGCAATATTGAACGGTTTATTCAGTATGAAAATGAGCTTGAGGTTAGTGAATCCATGTGCCAGATTGAGGGTAAGGCTAGAAACGAGCATCAAGGTGGGAAAATGATTAAGAATGCTGCAAGTTCTGGGTCATTAAGTTCAGTTCAAAAGTATAATGTTTCAACTTCAGCTACTCGTTTTCGTCTGAAGATCAAGTTTGGAAAAGAAAATGATACACATTGCTCAAATGTTCCGGAGTCTGTTGGTGGCTTGGCTTCTGCTTCCCACATGGGGTCTGATTCAGGTTCTCAGAAAGTAACCAACAATTCTGCAGATAAATTTTCTGAAGTGTCGGCTTTAAACAATTTAGAATCATTTAGAAAGGACCTGGACAAGGATTGTGCTGTTGTAAATGGACAAATTGTAAATAGGCAGTTAGAAAATTCTAAAATAACAGAGAAGTCAGATGGGGATGCAGAGGAACCATGTCACGGAGTTCCACCAGAGAGGGTGGTTGAAGAGTTAGTTAAGCCAATTACTAATTCTGTTATAGATCCAGGAACATCGCCTGATTCAGAAGTCATTGATTCCATTCCTGAAGTCCAGGTTGGAGAGAGACATGAAGAAGTTGTACATCTTGCTGTGTTAGGTTCTTCTAATGAGTTAAATTCTAATATGGATGTTACCTTTGGGAAGAGAGAGAAGAAGAAAGACAATCTTATTTGTTCAGGAAATTGTGTCACCGAAGATGGATCACAAGGTCAACCAGGGAATAATATAGTTAAGCATTCAAAGAATCACAGACGTAAGAAGAACTACAATGATGTGGTTAGCTCTTTAGAATTACCTACTTCCACTGAGCTAAGCAAATCTGTAAAGAGTAAAGAAATGGCTGCAGAATCATTGCCCTGTTCTGGACAGGTTGTACTTGGAGTCTCTACCAAGGCTTTGAAAGTTAAAAGTGATGTGAAAGTCAAGAAAACTGGTAAAACATCTGGTGACCATGGGTTTTCTGAATTCCAGCGTTCCAATGATTTGCCGTCTTCTACAAGACCTTTGGGTCGTAAATTGCCTAAAAGTCTTGAACCTAGTGAAGCTAGCAAGGCCAAATCAAAAGCTTCTGACTCGACAGGCAGGAAAAAGTCTACTACTGGACGCAAGGAAAAACAGAAAGAGCCAATTAACAAAAGTGAAGTCAAGGGAAAAGGTGTCTCTCTCAAATCTACATGTGAAGTGGAAGATCACCCGCATCCAGCAGATGTAGTTGGAAATCATAAGTTGGATGCTGTTGGAAAAATTGATCCCAGTGACAACAGTGTATCTGTCAACGTATCTAATTTGGACATGCCGCCTGGTTTTGGTTTGGGAGAACAACCTCAGTCACCGCGTAATGCATGGGTGAGTTGTGATGATTGTCACAAGTGGCGGCGTATTCCAGCTTTGCTTGCTGACCGGATTGATGAAACTAACTGCACCTGGACTTGCAAGGACAGCAGTGATAAAGCCTTTGCTGATTGTGCTATCCCTCAAGAAAAATCAAATGCAGAGATTAATGCAGAGTTAGGACTATCATATGCCTCTGGTGAAGAAGATGTATGTGAAGACTCCAAAAATTATAAGGAATTAGAATATCGACTACCATCAGGTTCCCAAGAGTCAACTTTTACCCGCATCTTCACCAATGAGTTTCTGCACCGCAACCCGAAAACTCAGACTATTGACGAGGTAATGGTTTGCCATTGCAAGCCACCTCCAGAAGGTAAGTTGGGATGCGGGGATGAATGTCTAAATCGGATGCTTAACATCGAATGTGTGCAAGGAACTTGCCCATGTGGGGACCGTTGCTCCAATCAGCAGTTCCAAAAACGTAGCTATTCCAGACTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGGCTGAAGGCACTTGAGCGTGTAGCCAAAGGCCATTTCATTATTGAATATGTTGGAGAGGTCCTTGATATGCCTGCATATGAGGCACGTCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAACGGCAGTGAGGTGATTGATGCAAGTGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAGATCTGTATTGGACTGTTTGCATTGCGGACTATCAAGCAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTTTGGAGCTGCTGCCAAAAAATGTTATTGTGGTTCACCTCATTGTCGAGGTTATATAGGCGGTGGTGATCCACTTAATGCTGAGCTTGTAGTTCATGGTGATTCTGATGATGAATATCCAGAACCCATGATGCTTACTGAAGATGGTGAAGTTGAGGACAACACACCTATGCCCTTTGATAATGTTGATACAGAGTCTTCTAGGCATGTATTAATGGACAGGGATGTATTGGACAAGTCTACAACTGCTATAGATGAAGATGGTTCTCCTGGGAAAGATAGTTCTATGAACCCTGCCTCTGCTGTTTCCCTGCTGCACAGTTCAGTTGAAGTGGAAGACTCAAAAGGCAATTTACCATCTGATCAAATAGAAGAAACTTCTCAGCAAATGGAGGATACAACAAGCAAGCCCATGCCTGCTGTCAGCAAAGTGTTGTCGAATTCTACTGATAGTAGAGAATCCAAGTCTGAAATGGTTGAAGGCGGGAATGGTGTTTCACAATCACATCTGCATGTGAAGAAGACTTCTAAACTAAATGCTTCTGTTAAAAAGGCTAAAGTCAGTGCTAATGCTGCAAATGGTCCTACAGCTGAGGTCGCAGCCAATCGATTGCCAGTGTCATCTATCAAACACAAAAAAGTAATCGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGTGGAATAAGCAAAAGAAAAGATGCCACTAAAGGCTACTTGAAACTTTTGCTTCTCACCGTGGCTTCAGGTGATAGATACACCGGTGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCTCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGACATAATTAGTAAAAATGGTTTACAGATGTTGCATAAGATCATGAAGCAGTACAGGCAAGACTTCAAAAAAATTCCAATACTACGAAAGCTTCTTAAGGTCTTAGAGTACCTGGCAGAAGGCAAGGTTTTGACACCCGAACATATCAACAGTGGTCCTCCTTGTCGTGGAATGGAGAGTTTTAGGCGTTCAATGCTGTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCGAAGAAATGGCAGAAAACGTGGCTATATGGACAGGGATGATAATAGGGTGGAATCTCACAGAAATTTCAACTCTAACAGATTTCCAGTATCACACAATCATAGGCACGAGCAGGGATTAAGACCTAAGGAAGAAATTGATTGCGGTCAGCAGTCTACGCTCATGACAACTTCAACTTCAGTAGATGGTGGCTCCCAGGAGGGCTGCTCTACACCGTCTTTGGATGGAGTTGAGATCAATGGGGTAAAAAAGCGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAGACAAATTCATATTATGCTGCTGTTATTGGCTCTACCAATGAAAGCCAGAACATGAATGAAGAAATTCCACCAGGGTTTTCATGTCCAATACGTTCTTTAAACAGTGCACTAAACTCCGGCGGTCCTGCTTTGCAAAATGCAAGCCATTCCGGATGGCCCTCTAGTTTAGTTACTGGTCAGCCAAAAGAGAAATTCAATTCTCGTTTGCCCGTCTCATATGGAATGCCATGGTCTGTTGCTCAGCAATATGGAACTCCTCATGCTGAAATCACAGGGTGTTGGGTCACTGCTCCTGGCATGCCTTTCAACCCATTTCCTCCATTACCCCCATATCCACGGGATATCCAAGACTGTCAACCTTCTAATACTAATGGTATGGAAATTGATCAACCTGCTGAAGTTAAGCAACAGGGTGCCAATGGTTTGGTTAATTGTTGCTCAGAATCAGATGACATGACTACTAGCACAGCTGGTGCCAAGTCCGAAGACACGAACCTTGAATGCGAGGATGATAAACACGACACTAAGAGGTTGAAGGGTGACTCCAATGATTTGGGGAAGAATTACTTTAGACAGCAGAAATGGAACAATTCAAAAATACATCGAACGTGGTTCAAGAGGAATGCATGGAAATGTAACGACAACAACTCTAGTGGTGATATGTGCAGTGTAGATGTAGATGTATCAAAAGAATCCAAAGTTACTAGTTATTCGGAGGATGCAATCTGTAGAGATGAGAAAGGTGGAAAATAA 6012 0.4207 MGSCGEPAIVGDPPGLSVMEQPLSSGFAAELDSVQELCSEEACNGMVDGSLEEAHVGCSVSFVDVAEGSCDALKKECENGDVLKLEKTVEDDCGNSLGICSEDIGVSDLRSGELCSEGYFQDDGYVDFPLESITSNNLQNHCAEQGEQKDIIEVSNLKSGRLCSEGNFQDGHYVDLPLESITSNNLQKHYAEQGEQKDVKSTIFSSAGDDAEVLEGNNDGADLLAGAVNCVFDARHSEVCLESDFVTGLLVDYNQENEPEEIMRNADSLPRVVEKCDALDGMDANSSRQISPSLDMEVPSGALYIDTKVESTSDMLHDQKNGEDCDSTHEEKIRTDVEEEITINSYVQANSSPDFQRTLKTSPVVDSLCQPTLLDPGSELQNGILQIEDNFCILKDCSADGTANSTIRKPFYPESGHSSLVLITNSSPKVLPDLLCNGDSVSINNNCAVDNPGQTNNDGKEAVEVDCITESILLPSQRSSQRTKFGRKTPTRKSSRKSKNKPSVTHPGGGMMINLETARKKRSCLSKPARSSVWGLLGNIERFIQYENELEVSESMCQIEGKARNEHQGGKMIKNAASSGSLSSVQKYNVSTSATRFRLKIKFGKENDTHCSNVPESVGGLASASHMGSDSGSQKVTNNSADKFSEVSALNNLESFRKDLDKDCAVVNGQIVNRQLENSKITEKSDGDAEEPCHGVPPERVVEELVKPITNSVIDPGTSPDSEVIDSIPEVQVGERHEEVVHLAVLGSSNELNSNMDVTFGKREKKKDNLICSGNCVTEDGSQGQPGNNIVKHSKNHRRKKNYNDVVSSLELPTSTELSKSVKSKEMAAESLPCSGQVVLGVSTKALKVKSDVKVKKTGKTSGDHGFSEFQRSNDLPSSTRPLGRKLPKSLEPSEASKAKSKASDSTGRKKSTTGRKEKQKEPINKSEVKGKGVSLKSTCEVEDHPHPADVVGNHKLDAVGKIDPSDNSVSVNVSNLDMPPGFGLGEQPQSPRNAWVSCDDCHKWRRIPALLADRIDETNCTWTCKDSSDKAFADCAIPQEKSNAEINAELGLSYASGEEDVCEDSKNYKELEYRLPSGSQESTFTRIFTNEFLHRNPKTQTIDEVMVCHCKPPPEGKLGCGDECLNRMLNIECVQGTCPCGDRCSNQQFQKRSYSRLKWFKCGKKGYGLKALERVAKGHFIIEYVGEVLDMPAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRTIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELVVHGDSDDEYPEPMMLTEDGEVEDNTPMPFDNVDTESSRHVLMDRDVLDKSTTAIDEDGSPGKDSSMNPASAVSLLHSSVEVEDSKGNLPSDQIEETSQQMEDTTSKPMPAVSKVLSNSTDSRESKSEMVEGGNGVSQSHLHVKKTSKLNASVKKAKVSANAANGPTAEVAANRLPVSSIKHKKVIEGSSNGRFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRYTGEAIQSNRDLSMILDALLKTKSRAVLNDIISKNGLQMLHKIMKQYRQDFKKIPILRKLLKVLEYLAEGKVLTPEHINSGPPCRGMESFRRSMLSLTEHDDKQVHQIARSFRDRWIRRNGRKRGYMDRDDNRVESHRNFNSNRFPVSHNHRHEQGLRPKEEIDCGQQSTLMTTSTSVDGGSQEGCSTPSLDGVEINGVKKRKRKSRWDQPAETNSYYAAVIGSTNESQNMNEEIPPGFSCPIRSLNSALNSGGPALQNASHSGWPSSLVTGQPKEKFNSRLPVSYGMPWSVAQQYGTPHAEITGCWVTAPGMPFNPFPPLPPYPRDIQDCQPSNTNGMEIDQPAEVKQQGANGLVNCCSESDDMTTSTAGAKSEDTNLECEDDKHDTKRLKGDSNDLGKNYFRQQKWNNSKIHRTWFKRNAWKCNDNNSSGDMCSVDVDVSKESKVTSYSEDAICRDEKGGK* 2004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5023 2003 ProSiteProfiles Zinc finger CW-type profile. 990 1044 IPR011124 GO:0008270
Tpr2g5023 2003 CDD SET_SETD2 1155 1297 IPR044437 GO:0010452|GO:0046975
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 864 880 - -
Tpr2g5023 2003 SMART shorttest3 1104 1155 IPR006560 GO:0005634|GO:0018024
Tpr2g5023 2003 Gene3D - 986 1049 - -
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 1343 1363 - -
Tpr2g5023 2003 Pfam SET domain 1167 1273 IPR001214 GO:0005515
Tpr2g5023 2003 SMART PostSET_3 1281 1297 IPR003616 -
Tpr2g5023 2003 SUPERFAMILY SET domain 1085 1294 IPR046341 -
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 853 937 - -
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 477 511 - -
Tpr2g5023 2003 ProSiteProfiles SET domain profile. 1156 1273 IPR001214 GO:0005515
Tpr2g5023 2003 PANTHER SET DOMAIN PROTEINS 476 1932 - -
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 485 500 - -
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 794 830 - -
Tpr2g5023 2003 ProSiteProfiles AWS domain profile. 1104 1154 IPR006560 GO:0005634|GO:0018024
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 1387 1448 - -
Tpr2g5023 2003 Pfam AWS domain 1119 1153 IPR006560 GO:0005634|GO:0018024
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 1397 1429 - -
Tpr2g5023 2003 Gene3D SET domain 1053 1305 IPR046341 -
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 1714 1730 - -
Tpr2g5023 2003 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 476 1932 - -
Tpr2g5023 2003 ProSiteProfiles Post-SET domain profile. 1281 1297 IPR003616 -
Tpr2g5023 2003 SMART set_7 1156 1279 IPR001214 GO:0005515
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 1337 1375 - -
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 1714 1751 - -
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 807 822 - -
Tpr2g5023 2003 MobiDBLite consensus disorder prediction 891 928 - -
Tpr2g5023 2003 Pfam CW-type Zinc Finger 996 1042 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5023 Tpr-Chr2 56051397 56064058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5023 1138 1297 Su(var)3-9 homologs AT1G73100 34.536 3.30e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr2g5023 SET 8.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5023 - - mtr:MTR_3g088625 2971.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5023 2 56051397 56064058 Tpr2g5023 2 56051397 56064058 ECH