Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g5013 | ATGTGCGATTGTTCCAGCTTAATAGGGTGTTTTAGATTCGTTTTTCAAAAGCTTTGCGCGCGTAAATTGATTCTGATTATGGGAATACTATGCGGCTTTGTTTCTAGCAATTGGGCTGAATCAGTCATCCAATTCGATTTCGAAATGGCAACCCAATTTGACATGTTGTGCGATGTTCTTCCTGGGCATAATTCATGGAAGTTCAAAGTTCGTGTCCTCCGTATGTGGGCAATTTCTTCTTTTATGAAGCCTAATGAGTTGAACTCTATGGAAATGGTGCTGATAGATGAGAAGGGAGGTAAGATTCATGCCTTGATAAGGAAAGAATTGGTTTACCTATTCCAGAATAAATTAAAGGAAGGGGAAGTTTATAAGCTATCAAACTTTGATGTTGTTCCAGTCGTTGGATTTTATCGTACAACTCTGCATCCTTACAAATTGATTTTTCGATCGAATACCAAAGTTCAGAATTTTGCGAGTTCTGATATTCCTATTTTGGGATTTTCTTTCACCGATCTTGCTGAAGTGGCTAGCTACTCTGTTAACTATGATTACCTAATAGATGTCATTGGTTTAATCTCTGGTATATCAAATGAGAGGGAGTATATTCGTGCTGGCAAAGTCATCAAGATGGTTGTGCTTGAACTTACAGACAATAGTGGTAAATGTGAATGCGCGTTGTTTGGTGATCATGTTGATGAGTTGCAAAGATTAATTGGTAATTGTCCTTCCGGTCTCCACGTTGTTGCACTACAGTTTGCCAAAGTTAAAATATTTAGAGGGAAAGTTTCCATTCAAGATGTTATGAATACCACAAGGATTTTTCTTGACCCTGAGATTAAAGAGACATCCGAGTTAAGAAAGGGATAA | 870 | 0.3782 | MCDCSSLIGCFRFVFQKLCARKLILIMGILCGFVSSNWAESVIQFDFEMATQFDMLCDVLPGHNSWKFKVRVLRMWAISSFMKPNELNSMEMVLIDEKGGKIHALIRKELVYLFQNKLKEGEVYKLSNFDVVPVVGFYRTTLHPYKLIFRSNTKVQNFASSDIPILGFSFTDLAEVASYSVNYDYLIDVIGLISGISNEREYIRAGKVIKMVVLELTDNSGKCECALFGDHVDELQRLIGNCPSGLHVVALQFAKVKIFRGKVSIQDVMNTTRIFLDPEIKETSELRKG* | 290 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g5013 | 289 | CDD | RPA1_DBD_B_like | 188 | 288 | - | - | |
Tpr2g5013 | 289 | CDD | RPA1_DBD_A_like | 69 | 155 | - | - | |
Tpr2g5013 | 289 | Gene3D | - | 53 | 157 | IPR012340 | - | |
Tpr2g5013 | 289 | Gene3D | - | 161 | 289 | IPR012340 | - | |
Tpr2g5013 | 289 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 60 | 285 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Tpr2g5013 | 289 | SUPERFAMILY | Nucleic acid-binding proteins | 168 | 287 | IPR012340 | - | |
Tpr2g5013 | 289 | PANTHER | ANIMAL RPA1 DOMAIN PROTEIN | 60 | 285 | - | - | |
Tpr2g5013 | 289 | Pfam | Domain of unknown function DUF223 | 91 | 184 | IPR003871 | - | |
Tpr2g5013 | 289 | SUPERFAMILY | Nucleic acid-binding proteins | 53 | 156 | IPR012340 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g5013 | Tpr-Chr2 | 55952903 | 55955089 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g5013 | 61 | 287 | Core DNA Replication Machinery Family | AT4G19130 | 25.641 | 6.88e-14 | 70.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g5013 | - | - | mtr:MTR_8g062030 | 262.692 |