Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5005 ATGTCTAGTCATAATACTAATAATCGTCGTTCATCTTTTTCGTCTTCAACAACGTCGTCCATGGCGAAACGACAACCTCCGGTAACAGTCACCGCTTCAGAGAACAACGCCGGAAAAGTTCTAGCTTCTGCCAAGAAACGTCCTCCTCTTACCAACCTCACAAATCAAAATGGTCCCCGCAATTCATCATCTTTGGTAACTAAAGTTGCAAAGACAAAGAAAGAATCTTCATTGTGTAATTCTTCGAGCTCAGCTATTTCCGGCAACAAAAAACCTACTTTGTCAAATGTTAAATCGGCTACTGTTGTTTTTCCTAAGGCCATTACAACTAGTACCACTAGTTCTTCATTTTCTGAAAGAAATGGAGTTAAGAATGAAGTTTTTGTTCCATTGGTTAGTACTACTTTCAATGTTCCTGTTTCGAGTAGTATGGATTTATCGTCGCCTGGTAAATCGGATGGAATGTCGGTCTCTATGGACGAGACAATGTCGTCTTGTGATTCTTTTAAGAGTCCTGATATTGAATATGTGGATAATAGTGATGTTCCAGCTGTTGATTCTATTGAGAGGAAGACTTTTTGTAGTCTTAACATTTCTGATTCTAATTACCCAACAGGTAATATTTGTAGTAGAGACATTCTAGTTGAGTTGGAAAAGGGGGAGAAAATTGTTAATATTGATAATGATCATGTGGATCCTCAGTTTTGTGCATCTTTTGCTTGTGATATCTACAAACATTTGCGTGCATCTGAGGCAAAGAAAAGACCTTCCACAGACTTCATGGAGAAAATTCAGAAGGACATAAATCCCAGCATGCGTGCTATATTGATTGACTGGCTAGTCGAGGTTGCTGAAGAGTATAGACTTGTACCAGATACATTGTATTTGACAGTAAACTACATCGATCGATATCTTTCTGGTAATCCGATGAACAGACAACAATTGCAACTACTTGGAGTTGCTTCTATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAAGTGGAGGAATTTTGTTATATAACTGATAACACATACTTCAAGGAAGAGGTTTTGCAGATGGAATCTACTGTCTTGAATTTTCTGAAATTCGAAATGACTGCTCCAACAATTAAATGCTTCTTGAGAAGATTTGTACGTGCAGCTCAAGGAGTTGATGAGGTCCCTTCACTACAACTAGAGTGCTTGACAAACTATATCGCGGAATTATCTCTATTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTATAGCAGCTTCTTCAATTTTCCTGGCAAAATATATGCTTTTCCCTTCAATGAAACCATGGAATCCAACATTGCAGCATTACACTCAATACCAGCCTGCTGATTTGTGTGTTTGTGTAAAGGATCTTCACCGCCTTTGTTGCAACAGCCCTAATTCCAATTTGCCTGCAATTAAGGAGAAATACAATCAGCACAAGTATAAATATGTGGCCAAGAAGTACTGTCCTCCTTCAATACCTCAAGAATTTTTCCAGAATTGA 1515 0.3842 MSSHNTNNRRSSFSSSTTSSMAKRQPPVTVTASENNAGKVLASAKKRPPLTNLTNQNGPRNSSSLVTKVAKTKKESSLCNSSSSAISGNKKPTLSNVKSATVVFPKAITTSTTSSSFSERNGVKNEVFVPLVSTTFNVPVSSSMDLSSPGKSDGMSVSMDETMSSCDSFKSPDIEYVDNSDVPAVDSIERKTFCSLNISDSNYPTGNICSRDILVELEKGEKIVNIDNDHVDPQFCASFACDIYKHLRASEAKKRPSTDFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQQLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESTVLNFLKFEMTAPTIKCFLRRFVRAAQGVDEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASSIFLAKYMLFPSMKPWNPTLQHYTQYQPADLCVCVKDLHRLCCNSPNSNLPAIKEKYNQHKYKYVAKKYCPPSIPQEFFQN* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5005 504 CDD CYCLIN 272 361 IPR013763 -
Tpr2g5005 504 Gene3D - 242 490 - -
Tpr2g5005 504 PANTHER CYCLINS 34 503 IPR039361 -
Tpr2g5005 504 SUPERFAMILY Cyclin-like 232 368 IPR036915 -
Tpr2g5005 504 Pfam Cyclin, N-terminal domain 242 368 IPR006671 -
Tpr2g5005 504 ProSitePatterns Cyclins signature. 273 304 IPR006671 -
Tpr2g5005 504 MobiDBLite consensus disorder prediction 1 38 - -
Tpr2g5005 504 SMART cyclin_7 375 463 IPR013763 -
Tpr2g5005 504 SMART cyclin_7 278 362 IPR013763 -
Tpr2g5005 504 MobiDBLite consensus disorder prediction 48 90 - -
Tpr2g5005 504 CDD CYCLIN 369 462 IPR013763 -
Tpr2g5005 504 MobiDBLite consensus disorder prediction 1 90 - -
Tpr2g5005 504 PIRSF Cyclin_A_B_D_E 2 501 IPR039361 -
Tpr2g5005 504 Pfam Cyclin, C-terminal domain 371 490 IPR004367 -
Tpr2g5005 504 SUPERFAMILY Cyclin-like 371 496 IPR036915 -
Tpr2g5005 504 Gene3D - 256 369 - -
Tpr2g5005 504 PANTHER CYCLIN-A1-1 34 503 - -
Tpr2g5005 504 SMART Cyclin_C_2 371 494 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5005 Tpr-Chr2 55853613 55857216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5005 8 504 Core Cell Cycle Gene Families AT1G44110 59.920 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5005 K06627 - gmx:547781 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5005 2 55853613 55857216 Tpr2g5005 2 55853613 55857216 ECH