Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5004 ATGCGTGTTTTTGTGCCTGCGCTGCGTTATAACAAAACTCACAGTGATCATCATCTTCTGAAAACCAATCGCCTCATTTTTCTTCAATCATCGATTTACCATCCAGCACACTCTCAGGGTTTTTTCATTTTCACTTCCAATCACAAAATGTTCACTCGTAGCCGACGTTTTCCTTCTTCTGATGCATCATCCTCCGAGAAGAAGAAATCATCCGTTTCAGATAATCCAGTTTCAAGCAAAAATGTCATCAATGCCGTCAAAACTCGCTTGACGAAGAAACGTCCTGCTCTTGCCGACGTAACCAATAGCAGAAATGCCTCTATCGGTAAATCCTCCTCCGTTGGTGCTTCATCCAAGCCCATGGTTCCATGCACGTCCAAAACTACAAAGACAAAGAAGGATTCCGTTGCCAGTTCGCAGAAAAATGTTATGCCTGGGAACGTTTTGCAACCCTCGTTAAAGTCAAGTGGATTATTGCGTTCCAAAGAAGCATGTTCTACCAAAGCTAGTCAAACTAAGACTGGAGTTGAAGCTTTCGTTGCGCCAAGCAATGATGGTGCTGTTTGTCCTGATTTTAAGAACAAGGTCTGTGATCCGAAATGGATGGACATTTCTCCAAGTAATTCATTTAGTGGTTCTACTCCACTGGATGAGAGCATGTCAACCAACAATTCTTTGATGACTCCGGAGTTAGAATATATTCGCAATGATGATATTATATCGGCCAAATCAATTGAGAATAAAACATGCAGCATTCTCAATATTTCAGACTCTTCCAAAATGGCAGGGAGAATACAGGATGTTGACACCATACTGAAGTCAAGAGCAAATGAGATTGTAGACATTGACTGCAATATCAAAGACCCACAGTTTTGTGCATCCATTGCCCATGAAATCTATGAAACTTTGCGTGCATCTGAGAAAAGTAAAATGCCATCTAAGAACTTCATGGAGAAGATACAGAAAGACATACATGCTGGCATGCGGGCAATGCTTATTGATTGGCTTGTGGAGGTTGCCGAAGAGTACAGACTTCTACCTGATACACTATTTTTGGCAGTTAACTACCTTGATCGCTATCTTTCAGGCAAAGCAATGATCAGACAGCGGTTACAACTGCTTGGTGTTACCTGCATGATGATTGCTGCTAAATACGAGGAGATCTGTCCCCCCAAGGCGGAAGAGTTCTGTTATATAACTGATAATACGTATTCTAAGGAGGAGTTGTTGGACATGGAGTCCTCTGTGCTGAATTTCTTGAAGTTTGAAATGACGGCTCCTACAACTAGATGTTTTTTGAGACGCTTTGTTGTTGTTGTTGCCCAACACACATGTGAGGTTCCATTGATGCAGTTGGAGTATTTGGCCGACTATCTAGCAGAGTTATCGCTTCTAGAGTATGACATGCTTAAGTATACACCGTCGTTAATAGCTGCTTCAGCCGCTTTCTTGGCTAAATATATACTACTTCCTAGGAAGAAACCTTGGAACTCTATGCTGAGGCATTACACAGGTTATCAAGCATCAGAATTGCGTGAATGTGTTAAGGGATTGCATCTGTTGTACTGCAATGGCTATCAGAATTCACCTTCCTTTATTGCTATCAAAGAAAAATACAGTCAGCATAAGTTCAAGTTTGTGGCGAAGAAGTATTGTTCTCCATCAATACCAGTAGAAGTATTTCACAACTGA 1692 0.4137 MRVFVPALRYNKTHSDHHLLKTNRLIFLQSSIYHPAHSQGFFIFTSNHKMFTRSRRFPSSDASSSEKKKSSVSDNPVSSKNVINAVKTRLTKKRPALADVTNSRNASIGKSSSVGASSKPMVPCTSKTTKTKKDSVASSQKNVMPGNVLQPSLKSSGLLRSKEACSTKASQTKTGVEAFVAPSNDGAVCPDFKNKVCDPKWMDISPSNSFSGSTPLDESMSTNNSLMTPELEYIRNDDIISAKSIENKTCSILNISDSSKMAGRIQDVDTILKSRANEIVDIDCNIKDPQFCASIAHEIYETLRASEKSKMPSKNFMEKIQKDIHAGMRAMLIDWLVEVAEEYRLLPDTLFLAVNYLDRYLSGKAMIRQRLQLLGVTCMMIAAKYEEICPPKAEEFCYITDNTYSKEELLDMESSVLNFLKFEMTAPTTRCFLRRFVVVVAQHTCEVPLMQLEYLADYLAELSLLEYDMLKYTPSLIAASAAFLAKYILLPRKKPWNSMLRHYTGYQASELRECVKGLHLLYCNGYQNSPSFIAIKEKYSQHKFKFVAKKYCSPSIPVEVFHN* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5004 563 CDD CYCLIN 328 417 IPR013763 -
Tpr2g5004 563 CDD CYCLIN 425 519 IPR013763 -
Tpr2g5004 563 Gene3D - 312 425 - -
Tpr2g5004 563 ProSitePatterns Cyclins signature. 329 360 IPR006671 -
Tpr2g5004 563 MobiDBLite consensus disorder prediction 55 139 - -
Tpr2g5004 563 Pfam Cyclin, C-terminal domain 427 549 IPR004367 -
Tpr2g5004 563 MobiDBLite consensus disorder prediction 55 86 - -
Tpr2g5004 563 Pfam Cyclin, N-terminal domain 298 424 IPR006671 -
Tpr2g5004 563 PANTHER CYCLINS 81 562 IPR039361 -
Tpr2g5004 563 Gene3D - 298 549 - -
Tpr2g5004 563 SUPERFAMILY Cyclin-like 427 553 IPR036915 -
Tpr2g5004 563 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 81 562 - -
Tpr2g5004 563 SMART Cyclin_C_2 427 553 IPR004367 -
Tpr2g5004 563 SMART cyclin_7 334 418 IPR013763 -
Tpr2g5004 563 SMART cyclin_7 431 520 IPR013763 -
Tpr2g5004 563 MobiDBLite consensus disorder prediction 98 139 - -
Tpr2g5004 563 SUPERFAMILY Cyclin-like 287 424 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5004 Tpr-Chr2 55845952 55852019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5004 199 563 Core Cell Cycle Gene Families AT1G44110 58.152 2.94e-148 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5004 K06627 - jre:108999040 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5004 2 55845952 55852019 Tpr2g5004 2 55845952 55852019 ECH