Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5003 ATGGCGCCAATCATCCAGAGTACTCAACCATGGGTCGAGAAATATCGTCCAAAGCAAGTGAAAGACGTTGCTCACCAAGAAGAAGTAGTTCGAGTTCTCACCAACACTCTCGAAACCGGAAGCTGCCCTCACATGCTCTTCTATGGTCCTCCCGGCACTGGAAAAACCACTACTGCCCTCGCTATCGCTCATCAGCTTTTCGGGCCTGAGCTATATAAGTCTAGGGTTTTGGAACTAAATGCTAGTGATGATCGTGGTATTAATGTTGTTCGGACTAAGATCAAAGATTTTGCAGCTGTGGCCGTCGGCACCAATCGGCCCAAGAATGGTTATCCTTGTCCGCCGTATAAGATAATTGTTCTGGACGAGGCAGATTCAATGACAGAAGATGCTCAGAATGCACTGAGGCGTACAATGGAAACTTACTCTAAAGTTACTAGGTTCTTTTTTATATGCAACTACATTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTTAAGCCGCTGACAGAAGAAATCATGAGCAACCGAATATTATACATCTGCAAAGAAGAAGGAATCCACCTTGATGCTGAGGGTCTTTCAACCCTAAGTACTATTTCTCAAGGAGATCTTCGTCGGGCTATAACATACTTGCAGTCTGCTGCTCGCTTATTTGGATCTTCCATTTCTTCGAAGGACCTGATTTCTGTGTCTGGGATTGTTCCAGCAGAAGTTGTTGAGGCACTTCTTAATGCTTGCAAAAGTGGTAATTTTGATTTAGCCAACAACGAAGTCAACAATTTCATTGCAGAGGGGTATCCAGTCTCTCAGATGCTAACTCAGTTGTTTGAGGCTATTGTTGAAGAAAAGGACATATCAGATGAACAGAAGGCAAGAATATCCAAGAAGCTGGGTGAAGCAGATAAGTGTCTAGTTGATGGTGCTGATGAATATTTGCAGCTTCTTGCTGTTGTCAGCAATACAATACAAGCTTTATGTAACATGCCAGAAGGATTTGCTTACGAGAGTTAA 1029 0.4305 MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNRPKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSNRILYICKEEGIHLDAEGLSTLSTISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIVPAEVVEALLNACKSGNFDLANNEVNNFIAEGYPVSQMLTQLFEAIVEEKDISDEQKARISKKLGEADKCLVDGADEYLQLLAVVSNTIQALCNMPEGFAYES* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5003 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Tpr2g5003 342 SMART AAA_5 41 174 IPR003593 -
Tpr2g5003 342 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Tpr2g5003 342 Gene3D - 240 329 - -
Tpr2g5003 342 CDD HLD_clamp_RFC 174 233 - -
Tpr2g5003 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 330 - -
Tpr2g5003 342 Gene3D - 176 239 - -
Tpr2g5003 342 PANTHER REPLICATION FACTOR C SUBUNIT 4 5 330 - -
Tpr2g5003 342 Gene3D - 3 173 IPR027417 -
Tpr2g5003 342 CDD AAA 26 166 - -
Tpr2g5003 342 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
Tpr2g5003 342 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5003 Tpr-Chr2 55821305 55826023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5003 1 338 Core DNA Replication Machinery Family AT1G21690 77.581 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5003 K10755 - gmx:100788329 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5003 2 55821305 55826023 Tpr2g5003 2 55821305 55826023 ECH