LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g4999	ATGGCAAACTTGATGCAGCAACAACATCAAGTTATGGAAACATCTTCAAATCATCATGAGAAATCAGGATGGAGAAAATTCTTGCCATATGTTGGTCCTGGTTTTCTTGTTTCCTTGGCTTACCTTGATCCTGGAAATATGGAAACTGATTTGCAAGCTGGAGCTAACCACAGATATGAGCTGCTGTGGATCATACTTATTGGACTCATATTTGCCCTTATAATTCAGTCATTGGCTGCAAATCTCGGCGTAACCACCGGGAAACATCTTTCAGAAGTATGTAAAGTTGAATATCCATTATTTGTGAAGTATTGTTTATGGTTATTAGCAGAGGTTGCTGTCATAGCTGCTGACATACCTGAAGTGATTGGGACAGCCTTTGCACTTAACATACTATTCAACATCCCATTATGGGCAGGAGTTCTGTTGACTGGCTGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAGTTGGAACTACTGATAACAATCCTAGTATTTGTAATGGCGGGATGTTTCTTTGCTGAAATGAGCTATGTAAATCCCCCAGTTTCTGATCTACTAAAGGGAATGTTTATACCCAAACTTGCCGGTGAAGGAACCGTAGGCGATGCTATTGCCCTATTGGGCGCCCTTATCATGCCGCACAATCTTTTCCTCCATTCTGCACTGGTGCTATCTCGAAAAGTACCTAGTTCTGTGGGAGGCATCAATGATGCATGTAGATACTTTCTCTATGAGAGTGGCATTGCTTTGTTTGTGGCGTTTTTAATCAATGTCGCAATGATTTCTGTGTCTGGCACTGTTTGTTCTGCCAGTGATCTTTCTGGAGATGATGTTGAACGCTGCAACGATCTTACCCTTAACTCCGCTTCTTTCCTTCTCAAGAATGTGTTGGGAAAATCGAGCTCAACCATTTATGCCATAGCATTGCTTGCCTCAGGACAAAGTTCTACCATCACCGGAACCTATGCAGGGCAGTACATCATGCAGGGTTTCTTGAACATAAGGATGAAAAGATGGAAAAGAAACTTGATGACTAGGTGCATTGCCATAGCACCTAGCCTTGTTGTTGCCATAGTTGGCGGTTCTTCTGGTTCTAGTCGGCTTATCATCATTGCATCAATGATACTTTCTTTTGAGCTTCCTTTCGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGTAGTACCAAAATGGGACCTCACAAGAATTCAATGATTATCATTACAATCTCATGGATACTAGGCTCTGGGATCATTGGTATCAATGTATACTACCTCAGTACTTCTTTTGTGAAGTGGCTAATTCATAGTAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATTATAGTGTTTCCTCTAATGGCATTTTATATTCTCTCAGTTATCTACCTCACCTTTAGAAAAGACACGGTTGAGACATTTATCGAGACAAAAAATGACACGGTAACACAAAACCAAGTGGAAAAAGGAATGGATCATGGTCAATTAGAGTTGAGCCATGTTCCTTATAGAGAAGACTTAGCTGATATCCCATTGCCAGAATAA	1563	0.4127	MANLMQQQHQVMETSSNHHEKSGWRKFLPYVGPGFLVSLAYLDPGNMETDLQAGANHRYELLWIILIGLIFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFNIPLWAGVLLTGCSTLLLLSLQRFGVRKLELLITILVFVMAGCFFAEMSYVNPPVSDLLKGMFIPKLAGEGTVGDAIALLGALIMPHNLFLHSALVLSRKVPSSVGGINDACRYFLYESGIALFVAFLINVAMISVSGTVCSASDLSGDDVERCNDLTLNSASFLLKNVLGKSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLNIRMKRWKRNLMTRCIAIAPSLVVAIVGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGSGIIGINVYYLSTSFVKWLIHSSLPKVANVFIGIIVFPLMAFYILSVIYLTFRKDTVETFIETKNDTVTQNQVEKGMDHGQLELSHVPYREDLADIPLPE*	521

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr2g4999	520	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	17	520	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Tpr2g4999	520	Pfam	Natural resistance-associated macrophage protein	48	409	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Tpr2g4999	520	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	25	401	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Tpr2g4999	520	Hamap	Divalent metal cation transporter MntH [mntH].	13	435	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Tpr2g4999	520	PANTHER	METAL TRANSPORTER NRAMP5	17	520	-	-
Tpr2g4999	520	PRINTS	Natural resistance-associated macrophage protein signature	106	132	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Tpr2g4999	520	PRINTS	Natural resistance-associated macrophage protein signature	134	153	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Tpr2g4999	520	PRINTS	Natural resistance-associated macrophage protein signature	159	180	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Tpr2g4999	520	PRINTS	Natural resistance-associated macrophage protein signature	209	232	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Tpr2g4999	520	PRINTS	Natural resistance-associated macrophage protein signature	319	338	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g4999	Tpr-Chr2	55796705	55801105	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g4999	20	520	Inorganic Solute Cotransporters	AT1G15960	60.679	0.0	627

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g4999	K21398		-	gmx:100787785	822.387

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g4999	2	55796705	55801105	Tpr2g4999	2	55796705	55801105	ECH

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