Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4979 ATGCAATTTGTTTTGCAGATTGGTGTGTTTAAAAACTCTTGTGAAGTCACGCTAAAGGAATTGAAACAATGGATGACACCAGAAAAGGCTAAAACTTCAATCACAACCTTTCCTTCTTCAGCTGAAATAGTACCTGAACCACTTGGTGTTGTGTTAGTCATATCTGCATGGAACTATCCATTTTTGTTGTCCCTCGATCCAGTTGTTGGAGCTATAGCAGCTGGTAATGTTGTGGTTCTAAAACCATCAGAAATTGCTCCAGCCTCCTCAGCACTGTTGGCAAAATTGTTAGGGGAGTACATGGATAATTCATGTGTAAGAGTTGTGGAGGGTGCAATTGATGAAACTACTGCATTGTTGCAACAAAAGTGGGACAAAATTTTATATACCGGTAATGGAAAAGTGGGAAGGATAGTAATGGCTGCGGCTGCAAAACACCTTACACCAATTATTCTAGAGCTTGGAGGAAAATCTCCAACTGTTGTTGATTCAAATGTCAATCTAGAGGTTACGGCTAGGCGGATAATTTCAGGCAAGTGGGGATGCAACAACGGACAAGCCTGCGTTGCTCCTGATTACATTATAACAACAAAAGACTTTGCTCCCAAATTGGTAGATGCCTTAAAAACGGAATTAGAAAATTTCTTTGGAAAGAATCCATTAGAATCAGTTGATTTGTCGCGCATTGTGAGTTCTAACCATTTTGCTCGCTTGACAAAGCTCTTGGATGACAATAAGGTTTCTGGCAAGATTGTTTGTGGAGGTCAAAAGGATGAAAGCAAATTGAGGATTGCTCCGACTCTTTTATTAGATGTTCCACGAGATTCTCTTATAATGAGTGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTGAATAAGCTGGAAGAAAGCTTTGATTTCATCAACGAAGGAACAAAGCCGCTTGCTGCATATTTATTTACAAACGACAACAAGTTCAAGGAGGAATTTGTGAAGAATGTTTCGGCCGGGGGTTTGCTTATCAATGACACTGTCTTACATCTTGTGGTTCATGCTTTCCCATTTGGGGGAGTTGGCGAGAGTGGAATGGGTGCATACCATGGAAAATTCTCCTTTGATGCTTTTACTCATAGAAAGGCAGTTCTTTATCGCGGTTTTACATGCGATGGATCAATAAGGTACCCACCTTATACTGATACAAAACAGAAAACGATGAAGGCTCTAGTCGCGGGTGATGTTATTGGTGTAGTCCGTGCTCTTTTTGGATGGTCCTAG 1260 0.4103 MQFVLQIGVFKNSCEVTLKELKQWMTPEKAKTSITTFPSSAEIVPEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNVVVLKPSEIAPASSALLAKLLGEYMDNSCVRVVEGAIDETTALLQQKWDKILYTGNGKVGRIVMAAAAKHLTPIILELGGKSPTVVDSNVNLEVTARRIISGKWGCNNGQACVAPDYIITTKDFAPKLVDALKTELENFFGKNPLESVDLSRIVSSNHFARLTKLLDDNKVSGKIVCGGQKDESKLRIAPTLLLDVPRDSLIMSEEIFGPLLPIITVNKLEESFDFINEGTKPLAAYLFTNDNKFKEEFVKNVSAGGLLINDTVLHLVVHAFPFGGVGESGMGAYHGKFSFDAFTHRKAVLYRGFTCDGSIRYPPYTDTKQKTMKALVAGDVIGVVRALFGWS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4979 419 PANTHER ALDEHYDE DEHYDROGENASE 4 419 - -
Tpr2g4979 419 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 5 374 IPR016162 GO:0016491
Tpr2g4979 419 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 152 159 IPR029510 GO:0016491
Tpr2g4979 419 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 156 356 IPR016163 GO:0016620
Tpr2g4979 419 SUPERFAMILY ALDH-like 6 386 IPR016161 GO:0016491
Tpr2g4979 419 PIRSF ALDH 1 414 IPR012394 GO:0006081
Tpr2g4979 419 PANTHER ALDEHYDE DEHYDROGENASE 4 419 IPR012394 GO:0006081
Tpr2g4979 419 Pfam Aldehyde dehydrogenase family 38 376 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4979 Tpr-Chr2 55548939 55551957 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4979 7 417 Aldehyde Dehydrogenase Gene Family AT1G44170 69.586 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4979 K00128 - gmx:100803104 683.715